PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO93151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 230aa MW: 25918.7 Da PI: 9.4227 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.2 | 5e-19 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++g++KK +ELS+LCd+e++ ii+s+ OMO93151 10 FITNDSARKATFKKRKKGLMKKVSELSTLCDIEACAIIYSP 50 89**************************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 230 aa Download sequence |
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCD IEACAIIYSP YDSQPEAWPS 60 PAGVQHVLSK FRDLSEMEQT KKMMNQESFL RQRITKANEQ LKKQCKENRE KEMTQVMYQS 120 LTGKGLHNLN MADLNDLGWL IDHSLKDISK RIDELNKGSN SQGFSAAAAA VAMVPPEAVT 180 KSGENLQVER PGPQTNVDTM QRIMDMINPQ EHVGFGGFTD DALNFNAFFP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLAFITNDSARKATFKKRK |
2 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-63 | M-type_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO93151 |