PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO93009
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 288aa    MW: 33098.4 Da    PI: 4.3596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO93009genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-10173217655
               HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
               +++ r RR++i ++ +eL +l+P  +      K++ ae+L+ A +YIk+Lq
  OMO93009 173 SIAARARRRKITEKTQELGKLVPGgN------KMNTAEMLQSAFKYIKYLQ 217
               67889******************955......******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MVLSSCSNWG TTIDVQTANN FCEPMFEAQQ QQQQLEYYLD YPLELPNYAF FDHPYNNCYF  60
PETYPPLLPY FPSPFENEAT ITNIVPYEEE DFCSYPIFSK RQKIIENPPF CSDLMPAANF  120
FDNSFLVLPE EQSIINHQVN NNYSLDNNGI NECNEESSKK KNSEKCSTVS AQSIAARARR  180
RKITEKTQEL GKLVPGGNKM NTAEMLQSAF KYIKYLQAQV GILQFMDSFQ ETEKESCKGN  240
MEILTSPKLQ EKLYMEEKCL VPKDFVLSLT TISKAPLSDE LSQLLEIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.14e-27bHLH family protein