PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO92249
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 297aa    MW: 33838.3 Da    PI: 9.2529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO92249genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.67.5e-34602001128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....tk..sgyWkatg 87 
               lp+G++F+Ptd+el+ e+L+ kv+ +       ++++   i+   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+    t+  + +W++tg
  OMO92249  60 LPAGVKFDPTDQELL-EHLEGKVRCDArklhplIDEFIPtIEGEnGICYTHPEKLP-GVRKDGLVRHFFHRPSKAYTTGTRKRRKvhtdTEggETRWHKTG 158
               799************.99****999885665443332333665557**********.566666788******************745553344667***** PP

       NAM  88 kdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
               k+++v+  +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  OMO92249 159 KTRPVFI-SGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 200
               *******.999***********6657999999*********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MTWCNDCSDV QTIERSSNSP PCHKAVIAER HKDCLVRTCP SCGHQIKCRE RAGIHDLPGL  60
PAGVKFDPTD QELLEHLEGK VRCDARKLHP LIDEFIPTIE GENGICYTHP EKLPGVRKDG  120
LVRHFFHRPS KAYTTGTRKR RKVHTDTEGG ETRWHKTGKT RPVFISGKVK GYKKILVLYT  180
NYGKQRKPEK TNWVMHQYHL GNNEEEKDGE LVVSKVFYQT QPRQCGSVKE SLSSKLKLPG  240
GHDHQGSQHH HHHHPKNNGF VEFYNPSFIS FDQGGQTRPN PSQLLPHFAV HDGSFIP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-132NAC family protein