PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Link Out |

Basic Information? help Back to Top

TF ID

OMO91808

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 227aa MW: 25648.4 Da PI: 6.7299

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO91808	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.8e-08	11	54	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W+ d+l+ +a +++ + +W++Ia+ ++ g+++ +++ ++ OMO91808 11 SWSWHQDKLFERALIMFPEEspgRWEKIAAQVP-GKSAMEVRKHY 54 7***************99*********.********9 PP
2	Myb_DNA-binding	42.6	1.4e-13	112	156	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r Rt+ q+ s+ qky OMO91808 112 PWTEEEHRLFLIGLQKFGKGDWRSISRNAVVSRTPTQVASHAQKY 156 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MFGNNNDSSS SWSWHQDKLF ERALIMFPEE SPGRWEKIAA QVPGKSAMEV RKHYDDLEHD 60 VLEIESGRIE LPSYECESDS MSMSWGNESG GSQVWFGSKG KEKESERRKG VPWTEEEHRL 120 FLIGLQKFGK GDWRSISRNA VVSRTPTQVA SHAQKYFLRL NSMNKKDKKR SSIHDITMAD 180 GDKSSNSISM DSKGNNGVIG GTMGHDHSSF ESMDQSKFFN EQVGSGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	2e-60	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO91808