PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO90013

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 1690aa MW: 188137 Da PI: 8.3387

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO90013	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	1326	1346	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H OMO90013 1326 CEICGKGFQRDQNLQLHRRGH 1346 ******************988 PP
2	zf-C2H2	10.9	0.0015	1400	1422	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ OMO90013 1400 WKCDKCSKRYAVQSDWKAHSKTC 1422 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 1690 aa Download sequence
MGTLSNLCSK LSLQEEPNQE DNKVIVTDND WLEEKDGELA WFHLLGRLYS KRKVNLEGLR 60 VAMFQAWKVE GDMVVKEVGD NLFSFQFEDE VERDRVLVTQ PWCFNRALLV LRDFGGLQSP 120 EDISFDSCPY WMRIFDVPVL MMTDRVGKAI GESMGVVLEV DESCGRYLRV RVELPLKEGT 180 TISTPHGELP VRFKYEKLPA FCRVCGILTH LDSDCPLGVI MLKTQGSITK RFTDQLRAEV 240 PDIKPRQSPG MSSSFRLGSG GVGSSRQSQR LNQGVSGSVS SRPRAYRNNV DSMVVRSRLA 300 ARAIQTADVS CEIISQFPTG MVARKSGRRR GILLLNNMNE EIGESSTPPS TGKKLKSVVV 360 ASNSAGLNHI IPGVGLSASG PNQQLGRVSI ISPNREGGGL GLLGQAVGSQ CLQPTVHAGP 420 KRAESYISVA ESSSTQLSTF VFGATSTTPA RRIRRWKKAA RVSQRYSFEA LGPASNFKVG 480 QKRNSNSSIG GGHEAMFYKR SREGNCALAG QENDDFGDDI YVPHEAVGEH ALAGDGRDEG 540 DQQDDNNTQA AEMVPCIGRA GGLALLWLNS CRVSILSFSK SHIDAQVGLD LNNCRRFTGF 600 YGQPETSRRQ ESWNLLKLSA TQYEMPWLCT GDFNELLTND EKIGGALRPQ IQMQRFREAV 660 DACEFQELAV TGPVMTWYWV DRCISPDMAA SLDREFTKED IRIAVFDMAP SKAPGPDGMS 720 HLFYQRFWHI VGDQVCDMAL SFLNHGESLL DINDTNVVLI PKVANPVTVK DLRPISLCNV 780 IFKIISKTLT NRLKEILPSI VGQNQSAFVP GRMIFDCSMI AFETVHYMKN KRRGNENHMA 840 LKLDLSKAYD RVEWIFLEGI MSRMGFSTRW VHLVMQCVRT VSYSILVNGV QTRRIVPSRG 900 IRQGDPLSPY LFLLCMEGFS SLLQHAERIG DIHGVEVARN APCISHLFFA DDSLLFLRAS 960 LGECDAIKNL LRIFELASGQ QINIDKSAAR YFRNSSFMQA QLGSNPSFVW RSLMAGREVI 1020 RVGSQWRIGN GLDVDVWRDR WIGKSSDHMP TPRSGVICSP CPVSALIDND GHWLIPQLEE 1080 LFEPEDVYNI LCIPLPYRPT PDTLIWSGTT TGQYTVRSGY YAARNMLGKQ VISREEISVK 1140 WRIVWGSLLL PKIKYFLWRL INNILPTKSQ LQLRGLPIGG NCEASNDFWE NLLLKAAQLG 1200 LLELMAAKLV HDVEALSQRG ASMNVNFSHH VWSPPPAGKL KLNTDASFNA EREEAGLGVV 1260 FRDETGAVVL SVVTRIDKVM DPMYAEVYAV RFGLILALRY GFTSYPEAEV IALSPKTLMA 1320 TNRFLCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRTTKEI RKRVYVCPEK TCVHHHPSRA 1380 LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYKCD CGTLFSRRDS 1440 FITHRAFCDA LAEETARPIS SNDETLDQTR RGLSLWMGQA SQGHDAIGKS LQEIHQLGSV 1500 NLGSIYSDPL VSTSNPPASD YQLNWVFGNN KVSTSNGEEL TSTSLPLSNI VNKESGAHQA 1560 LVSVPSLFST QHHTQHQTPS ANMSATALLQ KAAQIGATST DTSFLGSFGT KCSNNQVQDG 1620 NKYNNGLYSS TTLASELENS ANDISTLNQL QMYPAKRRRM QNEDTGGQTR DFLGVGVQAI 1680 CHPSSINGWI

Sequence ? help Back to Top

Protein Sequence Length: 1690 aa Download sequence

MGTLSNLCSK LSLQEEPNQE DNKVIVTDND WLEEKDGELA WFHLLGRLYS KRKVNLEGLR  60
VAMFQAWKVE GDMVVKEVGD NLFSFQFEDE VERDRVLVTQ PWCFNRALLV LRDFGGLQSP  120
EDISFDSCPY WMRIFDVPVL MMTDRVGKAI GESMGVVLEV DESCGRYLRV RVELPLKEGT  180
TISTPHGELP VRFKYEKLPA FCRVCGILTH LDSDCPLGVI MLKTQGSITK RFTDQLRAEV  240
PDIKPRQSPG MSSSFRLGSG GVGSSRQSQR LNQGVSGSVS SRPRAYRNNV DSMVVRSRLA  300
ARAIQTADVS CEIISQFPTG MVARKSGRRR GILLLNNMNE EIGESSTPPS TGKKLKSVVV  360
ASNSAGLNHI IPGVGLSASG PNQQLGRVSI ISPNREGGGL GLLGQAVGSQ CLQPTVHAGP  420
KRAESYISVA ESSSTQLSTF VFGATSTTPA RRIRRWKKAA RVSQRYSFEA LGPASNFKVG  480
QKRNSNSSIG GGHEAMFYKR SREGNCALAG QENDDFGDDI YVPHEAVGEH ALAGDGRDEG  540
DQQDDNNTQA AEMVPCIGRA GGLALLWLNS CRVSILSFSK SHIDAQVGLD LNNCRRFTGF  600
YGQPETSRRQ ESWNLLKLSA TQYEMPWLCT GDFNELLTND EKIGGALRPQ IQMQRFREAV  660
DACEFQELAV TGPVMTWYWV DRCISPDMAA SLDREFTKED IRIAVFDMAP SKAPGPDGMS  720
HLFYQRFWHI VGDQVCDMAL SFLNHGESLL DINDTNVVLI PKVANPVTVK DLRPISLCNV  780
IFKIISKTLT NRLKEILPSI VGQNQSAFVP GRMIFDCSMI AFETVHYMKN KRRGNENHMA  840
LKLDLSKAYD RVEWIFLEGI MSRMGFSTRW VHLVMQCVRT VSYSILVNGV QTRRIVPSRG  900
IRQGDPLSPY LFLLCMEGFS SLLQHAERIG DIHGVEVARN APCISHLFFA DDSLLFLRAS  960
LGECDAIKNL LRIFELASGQ QINIDKSAAR YFRNSSFMQA QLGSNPSFVW RSLMAGREVI  1020
RVGSQWRIGN GLDVDVWRDR WIGKSSDHMP TPRSGVICSP CPVSALIDND GHWLIPQLEE  1080
LFEPEDVYNI LCIPLPYRPT PDTLIWSGTT TGQYTVRSGY YAARNMLGKQ VISREEISVK  1140
WRIVWGSLLL PKIKYFLWRL INNILPTKSQ LQLRGLPIGG NCEASNDFWE NLLLKAAQLG  1200
LLELMAAKLV HDVEALSQRG ASMNVNFSHH VWSPPPAGKL KLNTDASFNA EREEAGLGVV  1260
FRDETGAVVL SVVTRIDKVM DPMYAEVYAV RFGLILALRY GFTSYPEAEV IALSPKTLMA  1320
TNRFLCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRTTKEI RKRVYVCPEK TCVHHHPSRA  1380
LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYKCD CGTLFSRRDS  1440
FITHRAFCDA LAEETARPIS SNDETLDQTR RGLSLWMGQA SQGHDAIGKS LQEIHQLGSV  1500
NLGSIYSDPL VSTSNPPASD YQLNWVFGNN KVSTSNGEEL TSTSLPLSNI VNKESGAHQA  1560
LVSVPSLFST QHHTQHQTPS ANMSATALLQ KAAQIGATST DTSFLGSFGT KCSNNQVQDG  1620
NKYNNGLYSS TTLASELENS ANDISTLNQL QMYPAKRRRM QNEDTGGQTR DFLGVGVQAI  1680
CHPSSINGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-126	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO90013