PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO89768
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 283aa    MW: 32491.6 Da    PI: 5.3376
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO89768genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.4e-1573122154
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
               ++ +GVr ++ +g+++AeIrdp     + kr +lg+f t+eeA + ++a r+++e
  OMO89768  73 CKSRGVRLRP-WGKYAAEIRDPI----QkKRLWLGTFVTEEEASAVYEAKRREFE 122
               678*******.**********72....35**********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MEPSMNFLKK FRVIYNDPEA TDSSSDEEEI ETMKKDGISF MKRVVKEISC LAVPVDSSKV  60
SDSKRNRKSS TRCKSRGVRL RPWGKYAAEI RDPIQKKRLW LGTFVTEEEA SAVYEAKRRE  120
FEAMLATSST VKSADLDDLF SQRSPSSVLD NVVSGNPIED HEPNNHTEFM VKKVVKEYRI  180
FMQSQKSVEE KKSPTKELLK KKDEQDSIEG LWEHPSTSGS WEELFGPASE NWLNNNAATV  240
DFLQVQHRPL LLLKDDNNRI DHLPDIGVLD SKDMSWIDEI LNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.12e-19ERF family protein