PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO89629

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 828aa MW: 91950.1 Da PI: 7.1516

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO89629	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.4	4.3e-07	248	281	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + OMO89629 248 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 281 468*****************************87 PP
2	ELK	23.8	1.1e-08	202	223	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ OMO89629 202 ELKIELKQGFKSRIEDVREEIL 223 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 828 aa Download sequence
MQEPGLGMMS SGGSGAIGGL SSGEVSVSGE QSRQLKAEIA THPLYEQLLA AHVSCLRVAT 60 PIDQLPLIDA QLAQSHNLLR SYASQHHQHG HSVSPHDRQE LDNFLAQYLI VLCTFKEQLQ 120 QHVRVHAVEA VMACREIENN LQALTGVTLG EGTGATMSDD EDDLQMDFSL DQSGGDGHDL 180 MGFGPLLPTE SERSLMERVR QELKIELKQG FKSRIEDVRE EILRKRRAGK LPGDTTTVLK 240 NWWQQHSKWP YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHSNSQST IAAVASTTSV 300 STGKRGGDGL AFVIVPDELT VGRSGPWLGI LNDACQHYNV FAVEFDNNYD PKFGDPNDDH 360 VGINLGSVVS FKTANLSVTN ISSLHDDHSV HRAWIMYDGD KKWIDIYLGF DGYPIPSLLL 420 LSSPLNLSPF LNEYMFVGFS ASTGDLTQIH NILSWNFSSS VKALLSLPSK HVCHKNVAHQ 480 VSKHSTGAKR SGSPSNFTIF LCVVGLSTIA LLGFYYGGKR RHRGGDSDSS SGTILAFAAK 540 KQKPVPPSKP RRFTISELYI ATRRFSKSEI LGSNSRGVLY RGTLMPNGRH VAVKRFSTKT 600 LNSSSFRLDW NRILKRISSL VNFCDDHPNL AAIRGWCYDN REIIIVYDYF HNGTLNKWLF 660 GLGVLSWARR VEIIKDIAQT VSFLHSKELF HGNLNTSSIF IDANYRAALG DYGLSLGGGG 720 GCRKVEPFIA KKKADVFMFG VLVLEIVAGK SKVQSQSDET GDEEEIDLLG FAWGMHERGE 780 RLKIIDERID SCVDLDQAVR VIEIGLSCTS IEKNARPSME EVVQFLNT

Sequence ? help Back to Top

Protein Sequence Length: 828 aa Download sequence

MQEPGLGMMS SGGSGAIGGL SSGEVSVSGE QSRQLKAEIA THPLYEQLLA AHVSCLRVAT  60
PIDQLPLIDA QLAQSHNLLR SYASQHHQHG HSVSPHDRQE LDNFLAQYLI VLCTFKEQLQ  120
QHVRVHAVEA VMACREIENN LQALTGVTLG EGTGATMSDD EDDLQMDFSL DQSGGDGHDL  180
MGFGPLLPTE SERSLMERVR QELKIELKQG FKSRIEDVRE EILRKRRAGK LPGDTTTVLK  240
NWWQQHSKWP YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHSNSQST IAAVASTTSV  300
STGKRGGDGL AFVIVPDELT VGRSGPWLGI LNDACQHYNV FAVEFDNNYD PKFGDPNDDH  360
VGINLGSVVS FKTANLSVTN ISSLHDDHSV HRAWIMYDGD KKWIDIYLGF DGYPIPSLLL  420
LSSPLNLSPF LNEYMFVGFS ASTGDLTQIH NILSWNFSSS VKALLSLPSK HVCHKNVAHQ  480
VSKHSTGAKR SGSPSNFTIF LCVVGLSTIA LLGFYYGGKR RHRGGDSDSS SGTILAFAAK  540
KQKPVPPSKP RRFTISELYI ATRRFSKSEI LGSNSRGVLY RGTLMPNGRH VAVKRFSTKT  600
LNSSSFRLDW NRILKRISSL VNFCDDHPNL AAIRGWCYDN REIIIVYDYF HNGTLNKWLF  660
GLGVLSWARR VEIIKDIAQT VSFLHSKELF HGNLNTSSIF IDANYRAALG DYGLSLGGGG  720
GCRKVEPFIA KKKADVFMFG VLVLEIVAGK SKVQSQSDET GDEEEIDLLG FAWGMHERGE  780
RLKIIDERID SCVDLDQAVR VIEIGLSCTS IEKNARPSME EVVQFLNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	1e-157	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO89629