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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OMO89443 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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| Family | MYB | ||||||||
| Protein Properties | Length: 335aa MW: 38045.9 Da PI: 6.7275 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 54.6 | 2.4e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEd++lv+ ++ +G g+W+++++ g+ R++k+c++rw +yl
OMO89443 13 RGLWSPEEDDKLVKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
788*******************************************97 PP
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| 2 | Myb_DNA-binding | 56.4 | 6.8e-18 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg +T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
OMO89443 66 RGTFTAEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
899*******************.*********.***********96 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 335 aa Download sequence |
MGHRCCSKQK VKRGLWSPEE DDKLVKHITA HGHGSWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLRRGTFT AEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLSQGL 120 DPKTHNLLSS RQRASNINKL SSQSQYSSEQ PFTISNIRSS TDHTTTPTVM INMNMNPPVL 180 TLPAALPDQP MAMQIPNSES RTHQIDPNKE FPYVSSIDSS TINMSSSSSS SIHHLSEFNY 240 NLLDDQNPCI NWDANVIVNE TTFEAPRVEG IQQQEREKIC DMEINKIVQV DNMDMVDAAP 300 SFDSCSFDLS LLESTLMSSA ICRDFNSMDE FSWNF |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G12720.1 | 1e-89 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OMO89443 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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