PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO89060

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

E2F/DP

Protein Properties

Length: 417aa MW: 46068.4 Da PI: 4.4957

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO89060	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	87.2	1.2e-27	113	178	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg OMO89060 113 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 178 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MKPPFMAPGG DYHRFTSTGP RHIADQEAEA IVVKSPLKRK SDTADRDVES SEWTMHPAFT 60 EVASSPLQTP VSGKGGKAQK TSRATKSNKS GPQTPASNLG SPGNNLTPAG PCRYDSSLGL 120 LTKKFINLIK QAEDGILDLN KAADTLEVQK RRIYDITNVL EGIGLIEKKL KNRIQWKGLD 180 VSRPGEVDDN VATLQAEVEN LTIEERRLDE QIRWLFVTED DIKSLPCFQN ETLIAIKAPH 240 GTTLEVPDPD EAVDYPQRRY RIVLRSSMGP IDVYLVSQFE EKFEEVQGLD PPPNNPSTVG 300 LNENPTTSVV TEESRGKEIE MPVEDNNRMC SDLSTSQDFV SGIMKIVPSD VDSDADYWLL 360 SDPTVSITDI WRTEPGVEWN DFGTLHEDYS MAAVSTPQPQ TPPANTTEVP STNSTGR

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MKPPFMAPGG DYHRFTSTGP RHIADQEAEA IVVKSPLKRK SDTADRDVES SEWTMHPAFT  60
EVASSPLQTP VSGKGGKAQK TSRATKSNKS GPQTPASNLG SPGNNLTPAG PCRYDSSLGL  120
LTKKFINLIK QAEDGILDLN KAADTLEVQK RRIYDITNVL EGIGLIEKKL KNRIQWKGLD  180
VSRPGEVDDN VATLQAEVEN LTIEERRLDE QIRWLFVTED DIKSLPCFQN ETLIAIKAPH  240
GTTLEVPDPD EAVDYPQRRY RIVLRSSMGP IDVYLVSQFE EKFEEVQGLD PPPNNPSTVG  300
LNENPTTSVV TEESRGKEIE MPVEDNNRMC SDLSTSQDFV SGIMKIVPSD VDSDADYWLL  360
SDPTVSITDI WRTEPGVEWN DFGTLHEDYS MAAVSTPQPQ TPPANTTEVP STNSTGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-161	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	OMO89060