PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO87681
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 543aa    MW: 60898.6 Da    PI: 8.98
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO87681genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.2e-171299499
              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
              v+  s++++ +rl +p  f ++ +g   +   + l+ +sg sW v l   +k +  ++ +GW +Fv+++ L+ gDf+vF++dg+  f   vkvf+ 
  OMO87681 12 VF--SSTSSANRLKIPVGFHKNLEGRVSG--SVLLKGPSGYSWLVDL--VQKNEDLFFDEGWADFVRDHSLECGDFLVFRYDGNLVF--DVKVFDP 99
              45..8889999********9777777555..6***************..888889**************************998777..8888875 PP
2B350.24.6e-16229323198
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
               f+ v+++ +v+ s  l +p +fa +h   ++++++++l++++g  W+v+    ++   +++l +GW +Fv++n++k+gD+++F+++   +fe++v+++r
  OMO87681 229 FVRVMKRFNVSGSYTLNIPYQFAMKHL--PNCKTEIILRNLKGACWTVNSVPtTRVHTSHTLCGGWLGFVRSNDIKVGDICIFEFV--LKFEFRVHILR 323
               666777778889999********9996..45899***************954566666799***********************76..47888999987 PP
3B350.44e-16436528196
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
               f+ ++++ +v+ s  l +p kf +++   + ++++++l++++gr W+v+   + k+++ +++ +GW  Fv++n++k gD+++F+l++  + e++v++
  OMO87681 436 FVRIMKKFNVSGSYTLKIPHKFSKAYL--PYCKTEVVLRTLQGRCWTVNSVPDSKGRTvHTFCGGWMAFVRDNDIKMGDICIFELVN--QYEMRVHI 528
               566677778888999********9995..457889***************6655554469999*********************986..45556665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    
MLKSRRPHFL NVFSSTSSAN RLKIPVGFHK NLEGRVSGSV LLKGPSGYSW LVDLVQKNED  60
LFFDEGWADF VRDHSLECGD FLVFRYDGNL VFDVKVFDPS TCEKETAFHC KCSQVCSEYD  120
GILGHKRDRE DAGVSLDQDC EGMMKRSRES SSEFEENVSD QEHCSRELVL ATKTCHGSIS  180
CGENNEGTIP KRTGKGEDLN LYDSGCTPMV AEFEEKKVAQ SFNSRFPFFV RVMKRFNVSG  240
SYTLNIPYQF AMKHLPNCKT EIILRNLKGA CWTVNSVPTT RVHTSHTLCG GWLGFVRSND  300
IKVGDICIFE FVLKFEFRVH ILRVGKDDSG KQSGKAAPNV LNSRCDATLP KKFAKNSSKV  360
HSKSMKNVQV CDNKGSKMLD KKKYGNAAKK SASVALCSLS RSGSEKQETA IGGLRMTLAL  420
DEEKAARSFA SGFPNFVRIM KKFNVSGSYT LKIPHKFSKA YLPYCKTEVV LRTLQGRCWT  480
VNSVPDSKGR TVHTFCGGWM AFVRDNDIKM GDICIFELVN QYEMRVHISG PGRKGLDYQH  540
APL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-20B3 family protein