PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO86201

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 732aa MW: 78370 Da PI: 6.514

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO86201	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.7	3.3e-16	466	512	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq OMO86201 466 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 512 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence
MPLSELYRMA RRKLDSSQDK NPSGSTDQSF VPENDFVELV WENGQISMQG QSSRARKISA 60 SSTLPSYLSS SNTPKARDKD RTNTKVGKFG AIDSVLSDMP MSVPTSEMSL NQDDEVVPWF 120 DYPVDQSLQN EYSDFLPELS GVTVNEIPTH SNFALLNRRS QSIRDSCTVS LNNSAGYEQG 180 NLSKVPTPAD AEAKPRSATT QSSTLPSLPC QTSSPYLRSR VLENTGNSVG HKSTHRAICG 240 ESIGVQTSDI ALPGIKTQKL DSVQPCNNTV LMNFPHFSRP SAVVKASLQN ISAMTSIERI 300 GSKEKGSATG ISAPPDSTLF DSSINIQKDR ISHCQPKIVP AKTNIKESEA KSLDEPVAVK 360 PTNAISEDNV LKNDKGPSQV IGENASKGLP DGDKTIEPVL AASSVCSGNS VERASDDPVH 420 NLKRKNRDNE ESECPSEDAE EESVGVKKAF LARGGTGSKR SRAAEVHNLS ERRRRDRINE 480 KMRALQELIP NCNKVDKASM LDEAIEYLKT LQLQVQIMSM GAGLYMPPMM LPSGMQHMHA 540 AHMAHFAPMG VGMGMGMGMG FGMPLQDVNP ASSACPMVQV PPILGAPFSG AGPQMSGPTA 600 LHGMAGSNLQ LFGLPGQGLP MSMPHAPLIP ISGGHLMKSS IGTSGSVQVG ALNNIDSATA 660 SSSKDPIQNI NSQVAHNTNV HSSMNQAPSQ CAQTNQSFEQ PVAVQENGKA SEITGGMPYR 720 SADENEKVPD RS

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence

MPLSELYRMA RRKLDSSQDK NPSGSTDQSF VPENDFVELV WENGQISMQG QSSRARKISA  60
SSTLPSYLSS SNTPKARDKD RTNTKVGKFG AIDSVLSDMP MSVPTSEMSL NQDDEVVPWF  120
DYPVDQSLQN EYSDFLPELS GVTVNEIPTH SNFALLNRRS QSIRDSCTVS LNNSAGYEQG  180
NLSKVPTPAD AEAKPRSATT QSSTLPSLPC QTSSPYLRSR VLENTGNSVG HKSTHRAICG  240
ESIGVQTSDI ALPGIKTQKL DSVQPCNNTV LMNFPHFSRP SAVVKASLQN ISAMTSIERI  300
GSKEKGSATG ISAPPDSTLF DSSINIQKDR ISHCQPKIVP AKTNIKESEA KSLDEPVAVK  360
PTNAISEDNV LKNDKGPSQV IGENASKGLP DGDKTIEPVL AASSVCSGNS VERASDDPVH  420
NLKRKNRDNE ESECPSEDAE EESVGVKKAF LARGGTGSKR SRAAEVHNLS ERRRRDRINE  480
KMRALQELIP NCNKVDKASM LDEAIEYLKT LQLQVQIMSM GAGLYMPPMM LPSGMQHMHA  540
AHMAHFAPMG VGMGMGMGMG FGMPLQDVNP ASSACPMVQV PPILGAPFSG AGPQMSGPTA  600
LHGMAGSNLQ LFGLPGQGLP MSMPHAPLIP ISGGHLMKSS IGTSGSVQVG ALNNIDSATA  660
SSSKDPIQNI NSQVAHNTNV HSSMNQAPSQ CAQTNQSFEQ PVAVQENGKA SEITGGMPYR  720
SADENEKVPD RS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	471	476	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-59	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO86201