PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO86130
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 402aa    MW: 45378.3 Da    PI: 5.6991
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO86130genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-056387123
              EEETTTTEEESSHHHHHHHHHH..T CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
              y+C+ Cgk ++++  + +H+++  H
  OMO86130 63 YSCGLCGKGYRSSKAYAQHLKSrtH 87
              99******************98666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    
MVRLLRRIWE LAASSRLTDY RIDEGRRRIK VAGVPGVTEA LFLAKQAALA QEKDKQNEAP  60
MLYSCGLCGK GYRSSKAYAQ HLKSRTHLVR ASQGTNNPEE EKAIIKPLPP RAVSKPPQPR  120
DRDDEESEDE WVEVDPEEDL VGQAANSLTD LNVNEEASAD DMDTDDEDGE ELDPCCCFMC  180
DKDHDTLESC MVHMHKFHGF FIPDVEYLKD PEGLLTYLGL KVKRDFMCLY CNERCHAFSS  240
LEAVRKHMAA KGHCKVHYGD GDEDEEAELE EFYDYSSSYV DESGKQLVAV GDMGNNVELG  300
GGSELIISRR TDRGITTRTL GSREYLRYYR QKPRPSPANN MAITAALAAR YRSMGLATVQ  360
SREQIVRMKV MKAMNRSGVE AMRTKIGMKS NVIRNLPKNV PY