PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO85977

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MIKC_MADS

Protein Properties

Length: 277aa MW: 31972.8 Da PI: 10.2841

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO85977	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.7	9.7e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++gk+ye+ss OMO85977 9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQRGKVYEFSS 59 79***********************************************96 PP
2	K-box	58.1	3.7e-20	82	171	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e+ e+l+ e+a++ ++ie+L+ ++R+llG++L+ s eL+++ +qLe+sl kiR++K++l++eqie+l+ kek+l e+n +L ++ OMO85977 82 RMEQYVEQLKLEAANMVNKIEQLEVSKRKLLGQGLGLSSRLELEEVFNQLERSLAKIRARKDQLFKEQIEQLKAKEKSLLEDNAKLAAQC 171 56788999******************************************************************************9886 PP
3	K-box	24.5	1.1e-09	192	268	5	82
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 s++s+++ ++e+l+ e+ak+ k+i++L+ ++R lG+ L+ s +L+++ +qL+++ + i + K++l++e+ie+ +k OMO85977 192 SQSSQSSDQSEQLKLEAAKMVKKIDQLKASIR--LGQrRLNLSSRLDLEEISSQLKRGWNDINAIKDQLIKEEIEQKKK 268 334467788999***************976..676157777777***************************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MVRGKIQMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ RGKVYEFSSS 60 DMQKTIERYH KYIKEVQAAK PRMEQYVEQL KLEAANMVNK IEQLEVSKRK LLGQGLGLSS 120 RLELEEVFNQ LERSLAKIRA RKDQLFKEQI EQLKAKEKSL LEDNAKLAAQ CGELRLQAST 180 QQKEATVTYN CSQSSQSSDQ SEQLKLEAAK MVKKIDQLKA SIRLGQRRLN LSSRLDLEEI 240 SSQLKRGWND INAIKDQLIK EEIEQKKKYS SITGRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.3	1e-65	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OMO85977