PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO85961 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 27918.7 Da PI: 8.6171 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.7 | 2.1e-30 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +rienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gk+ e+ OMO85961 9 ERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFG 58 69**********************************************95 PP | |||||||
2 | K-box | 93.6 | 3.2e-31 | 78 | 171 | 6 | 99 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ e + ++l+qe+ kLk+++e+Lqr+qRhllGe+Le+Ls+keL ++e+q++++l++ R+kK++l+++ +eel+kke+el++enk+L+++le OMO85961 78 QVNIPEDEGQTLYQEVLKLKAKYESLQRSQRHLLGEELEPLSVKELYKIEKQVDRALSQARQKKMQLMFDRMEELRKKERELEDENKQLKSQLE 171 445778889*********************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MGRGKVVLER IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKVSEFGSN 60 TNVSETLEKY WQHRYTSQVN IPEDEGQTLY QEVLKLKAKY ESLQRSQRHL LGEELEPLSV 120 KELYKIEKQV DRALSQARQK KMQLMFDRME ELRKKERELE DENKQLKSQL ELEQCFQVAQ 180 GFGDPNIEAS NEYNVAASSQ ANPPQHDSSL AMGYHQFIPQ ERVVEARLEI RGANKRAAGW 240 L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 6e-61 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO85961 |