PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85925
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 268aa    MW: 29893.1 Da    PI: 8.9425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85925genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.5e-1486136355
               HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
               + h e+Er+RR+++ s ++ Lr+llP+      ++K s ++   +Av+YIk+L+
  OMO85925  86 KLHREIERQRRQDMASLYASLRSLLPHeY---IKGKRSMSDHMNEAVKYIKHLE 136
               67*************************77...********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MFSLQQSDDL VYQILSNSSQ HKIPQDLIFG NHHASVEKGC SPSDDIQPII IGSSSNTMKK  60
TRRRKLCQTD EGLAAASACD KYKKQKLHRE IERQRRQDMA SLYASLRSLL PHEYIKGKRS  120
MSDHMNEAVK YIKHLENKVK ELDVKRDELK RVGNLGALGS GITQSSNHDC FIIQPTLIGV  180
EIMFRSGLEG KGLPLSRVLA AIVNEGLHVV SCVSAKSEDY LLHTIQTEVN DLSSINLPEL  240
QQRLSKASEV VTNKSHNAQG VSNILVNH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16286RRRKLCQTDEGLAAASACDKYKKQK
26387RRRKLCQTDEGLAAASACDKYKKQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.13e-42bHLH family protein