PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO85548

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 563aa MW: 61850.2 Da PI: 6.1557

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO85548	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.6e-11	340	382	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L OMO85548 340 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 382 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MVLGANGMVW MDGEEDEDAV SSWTRNNNNN NSSSNNNEIE TTTKEGDLNM SGASLSTFKS 60 MLDTDWYMNP AMNQDLQIRE LGFCSNQVDN NLLLHQPIDS SASCSPSQAF TLDPSQSHPF 120 LPPKSCFSSL LCNNPFDNSF DFASETAFLG HFQPNQTPNL VGFAHSQMGT PPEFSSSSEF 180 QSTRLYTGNE NASALSGGFS GGGFEGFDGS GNALFMNRAK ILKPLEVFPS VGSQPTLFQK 240 RAAMRQGSGG SDRLGNLDIS GLRFGGQPSD GKRKRYDEGD MDEGSIDMSG LNYDSDERND 300 DSKMEESVKN GGCNSNATST VTGGGDQKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV 360 PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LMPPSTSFHP LTPTPPTLPC 420 RVKEELCPSS LPSPKSQPAK VEVRVREGRA VNIHMFCARR PGLLLSTMRA LDNLGLDIQQ 480 AVISCFNGFA LDVFRAEQCR EGQDVLPEQI KAVLLDSAGF HGIVVQIKGS QKQKDEKEMR 540 IYVHRARRSP HQATHWSTSD SIF

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MVLGANGMVW MDGEEDEDAV SSWTRNNNNN NSSSNNNEIE TTTKEGDLNM SGASLSTFKS  60
MLDTDWYMNP AMNQDLQIRE LGFCSNQVDN NLLLHQPIDS SASCSPSQAF TLDPSQSHPF  120
LPPKSCFSSL LCNNPFDNSF DFASETAFLG HFQPNQTPNL VGFAHSQMGT PPEFSSSSEF  180
QSTRLYTGNE NASALSGGFS GGGFEGFDGS GNALFMNRAK ILKPLEVFPS VGSQPTLFQK  240
RAAMRQGSGG SDRLGNLDIS GLRFGGQPSD GKRKRYDEGD MDEGSIDMSG LNYDSDERND  300
DSKMEESVKN GGCNSNATST VTGGGDQKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV  360
PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LMPPSTSFHP LTPTPPTLPC  420
RVKEELCPSS LPSPKSQPAK VEVRVREGRA VNIHMFCARR PGLLLSTMRA LDNLGLDIQQ  480
AVISCFNGFA LDVFRAEQCR EGQDVLPEQI KAVLLDSAGF HGIVVQIKGS QKQKDEKEMR  540
IYVHRARRSP HQATHWSTSD SIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	330	348	KKKGMPAKNLMAERRRRKK
2	342	349	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-152	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO85548