PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO85499

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CO-like

Protein Properties

Length: 460aa MW: 51744 Da PI: 5.8737

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO85499	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.5	5.5e-08	16	54	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++ k++ lfC+ ++ lC C ++ H+ H OMO85499 16 LCDFCNTKPAVLFCRADSAKLCLFCDQQVHSAnalslkH 54 7*****************************655666666 PP
2	zf-B_box	25	3.8e-08	57	104	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.........Htvvp 41 ++C+ ++ k+ ++ C +++ +lC+dC ++H++ H+++p OMO85499 57 SQICDSCKTKPSSFLCSNDNLMLCQDCDWNSHNSnncsvsalqHDRSP 104 689*****************************8788888888888776 PP
3	CCT	61.1	3.5e-21	408	451	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+k+R++eK+irYesRKa+A++R+R KGrFvk++ OMO85499 408 RGNAMLRYKEKKKNRRYEKHIRYESRKARADTRKRFKGRFVKAS 451 7789**************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MEKVSKSKPR RSVLFLCDFC NTKPAVLFCR ADSAKLCLFC DQQVHSANAL SLKHARSQIC 60 DSCKTKPSSF LCSNDNLMLC QDCDWNSHNS NNCSVSALQH DRSPVEGFSG CPSVTELASL 120 LGLDLKPKDL MNLNPGFSFC EQELLNLEDF MVPTENSSAL LSSVKLNHEV YRQLVEMGKR 180 DLVRVSGDGA EMGPETPSSR SSEHGKVGSF EMENGDDEEL ELLHKQTPFT DLLMLQNNGV 240 SRKNDYVAEG ELMYDCKSSY QASKIWDFQS GRSKDCEESG PEDAGCINGI SDRGFVIKNY 300 GEFAEEEGDL SKRKVFQDLF EMSHSMRCED ALSRNNNCNQ PFSSYTLTTE ESNNVPVVGS 360 SSDSKVVEPL KSDSNRYVQV MEHCVPAGNE SINEARTKFD MELLAQNRGN AMLRYKEKKK 420 NRRYEKHIRY ESRKARADTR KRFKGRFVKA SDQAPPDVQV

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MEKVSKSKPR RSVLFLCDFC NTKPAVLFCR ADSAKLCLFC DQQVHSANAL SLKHARSQIC  60
DSCKTKPSSF LCSNDNLMLC QDCDWNSHNS NNCSVSALQH DRSPVEGFSG CPSVTELASL  120
LGLDLKPKDL MNLNPGFSFC EQELLNLEDF MVPTENSSAL LSSVKLNHEV YRQLVEMGKR  180
DLVRVSGDGA EMGPETPSSR SSEHGKVGSF EMENGDDEEL ELLHKQTPFT DLLMLQNNGV  240
SRKNDYVAEG ELMYDCKSSY QASKIWDFQS GRSKDCEESG PEDAGCINGI SDRGFVIKNY  300
GEFAEEEGDL SKRKVFQDLF EMSHSMRCED ALSRNNNCNQ PFSSYTLTTE ESNNVPVVGS  360
SSDSKVVEPL KSDSNRYVQV MEHCVPAGNE SINEARTKFD MELLAQNRGN AMLRYKEKKK  420
NRRYEKHIRY ESRKARADTR KRFKGRFVKA SDQAPPDVQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	2e-65	CO-like family protein

Link Out ? help Back to Top
Ensembl	OMO85499