PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO85101
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB
Protein Properties Length: 305aa    MW: 34578.7 Da    PI: 8.5926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO85101genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-082973345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+eE + + +a +++ ++   +W ++a++++ g+t  +++  + 
         OMO85101 29 KWTAEENKCFENALALYDKDtpdRWFKVAAMIP-GKTVGDVIKQYK 73
                     8********************************.****99988775 PP
2Myb_DNA-binding47.25e-15137181347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
         OMO85101 137 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 181
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MMNRGLEILS PASYLQTSNW LFQESKGTKW TAEENKCFEN ALALYDKDTP DRWFKVAAMI  60
PGKTVGDVIK QYKELEEDVS DIEAGLIPIP GYSSDSFTLE WVNDSHVFDG FRQYYTPGGK  120
RGTGTRPSDQ ERKKGVPWTE EEHRQFLMGL KKYGKGDWRN ISRNFVTTRT PTQVASHAQK  180
YFIRQLTGGK DKRRSSIHDI TTVNIPDTPT SSPDHSKPLS PNNSAAVMQA QQQQKAAGVT  240
KELFEWKQQN EGAMVFNQTS GNAFLSPFCG ISSYGVTKVE EQDLIPRSQF GSYNTLFQMQ  300
SMQRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-127MYB family protein