PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO84592
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 220aa    MW: 24623.2 Da    PI: 4.7673
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO84592genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-183988255
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               y+GVr++  +g+WvAeIr+p   + r  r +lg+f t +eAa a+++a++kl+g
  OMO84592 39 TYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFNTSFEAAVAYDEAARKLYG 88
              69****999.**********8...2.359************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MEAEGKAADC AKKLAVSSMG KSRKGCMKGK GGPENATCTY RGVRQRTWGK WVAEIREPNR  60
GNRLWLGTFN TSFEAAVAYD EAARKLYGQS AKLNLPQPND HQFLPSDVSS NFPSNFVNSC  120
KESSNGLFLG ECSSGSSSGN SVQSDEERLV RREINTEGFK GSISSNDDDE EQFYWPEFSL  180
ENDHFLKMND IEVLMGQEFN KVNWDIDGNE IPGIQSQWFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.15e-47ERF family protein