PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO84466

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 409aa MW: 45075.1 Da PI: 5.2129

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO84466	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	42.1	2e-13	222	263	1	42
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLt 42 k r+rWtpeLHe+Fveav+qLGG e++ k + + ++k+L OMO84466 222 KSRMRWTPELHEAFVEAVTQLGGGERTSEKDLTSIEDMKSLD 263 68**************************99999988888775 PP
2	Myb_DNA-binding	29.3	1.9e-09	224	245	1	22
TSSS-HHHHHHHHHHHHHTTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg 22 r+rWT+e++e +v+av+qlGgg OMO84466 224 RMRWTPELHEAFVEAVTQLGGG 245 89******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MSSSFPALRN HFKERYPKLP DSFQASAGGE LMKNSRLPQE SSLAPGNGTL GNSFSSPSMP 60 TNVMHASVLS HDRPSQHPAF ISQSSTNLAS LSPIDSSYLD QSTALINQPQ ENKDVSWSID 120 QLQDFLDLTE NAAVPNGLLE SSTGVMASED QNKRAGWQEW ADRLVSVGDA LDPDWSKFLD 180 NTNASDPKLK LLKPSGDISM QQPRFHHNQP APHGELSAPP TKSRMRWTPE LHEAFVEAVT 240 QLGGGERTSE KDLTSIEDMK SLDLKATIGI TEALRLQMEV QKQLHEQLEI QRNLQLRIEE 300 QGRYLQKMFE KQKKMEDERG SAPSSALDDL PAILPSSMHT SCMNDKSKAL EPVHEKTGTD 360 TGNASARKEE IPQDVSRKQK ASETGPANCV GTDDDESGSS LSKRARTEK

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MSSSFPALRN HFKERYPKLP DSFQASAGGE LMKNSRLPQE SSLAPGNGTL GNSFSSPSMP  60
TNVMHASVLS HDRPSQHPAF ISQSSTNLAS LSPIDSSYLD QSTALINQPQ ENKDVSWSID  120
QLQDFLDLTE NAAVPNGLLE SSTGVMASED QNKRAGWQEW ADRLVSVGDA LDPDWSKFLD  180
NTNASDPKLK LLKPSGDISM QQPRFHHNQP APHGELSAPP TKSRMRWTPE LHEAFVEAVT  240
QLGGGERTSE KDLTSIEDMK SLDLKATIGI TEALRLQMEV QKQLHEQLEI QRNLQLRIEE  300
QGRYLQKMFE KQKKMEDERG SAPSSALDDL PAILPSSMHT SCMNDKSKAL EPVHEKTGTD  360
TGNASARKEE IPQDVSRKQK ASETGPANCV GTDDDESGSS LSKRARTEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	9e-70	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMO84466