PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO84392
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 419aa    MW: 46553.4 Da    PI: 8.4813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO84392genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.6e-07226248123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               + C+ Cgk F+r  nL+ H+r H
  OMO84392 226 HYCQVCGKGFKRDANLRMHMRAH 248
               68*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    
MISGTASCFP NASQMYNPVA DQDIVSSSLE AASSNADAHS TSLLYNLSIL KDKVHQVQSL  60
VSIIVSPDHQ TTQPESTSLA LANMGSLVQE IIVTASSMIF VCQQMSLGTA SSISAGNNNN  120
QLHQQHVIRV PEKADYNHNI VQERGQGFYS TTDQTICSWL DKNDNDGNGS TLQVSFEDHK  180
VQRNNNKAEL GQRRETSEGS RSQGISSNSY DIIELDAADL LAKYTHYCQV CGKGFKRDAN  240
LRMHMRAHGD EYKTSAALTN PMKNHSEGNG DMGMGPNCST KLPKKYSCPQ EGCRWNQKHA  300
KFQPLKSMIC VKNHYKRSHC PKMYVCKRCN RKQFSVLSDL RTHEKHCGDL KWLCSCGTTF  360
SRKDKLMGHV ALFVGHSPVV TSSNNSLSKP AGKLENQATA ATMQIDDRYE FMKQFHLNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-120C2H2 family protein