PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO84146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 376aa MW: 41638 Da PI: 8.1871 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.8 | 1.1e-41 | 81 | 157 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v+++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ OMO84146 81 CLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTINGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 157 **************************************************************************985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence |
MEWNLKATSW DLTEFVEEAV PSMNAENGSS SSSYGVARNK GDFSVDLKLG RVGNSGEESK 60 MESSPSKRAR ATNNGTHQVS CLVDGCNSDL SNCRDYHRRH KVCELHSKTP QVTINGHKQR 120 FCQQCSRFHS LEEFDEGKRS CRKRLDGHNR RRRKPQPYPL SRSGSYFSNH QGTQMIQFSS 180 LHVYPSTTVV KPTWPGVTNS QTDSRHLNQQ QQLYSHEKQN LVVGSSSSNN RAGKQFTFLE 240 GDNNTPQNQT LPATSICQQL LRPAPFSEGS GGSSHNMFSD RLATPVQDSD CALSLLSSPQ 300 TQTSGISLIS SMVQPHSFPL VQPLGPSLQN HVIEPMDSVV VANGRDQTVH YPGMFHIGSE 360 GSSGTEASQT LPFHWQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 138 | 155 | KRSCRKRLDGHNRRRRKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-73 | SBP family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO84146 |