PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO83973
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 629aa    MW: 68073.5 Da    PI: 5.9925
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO83973genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.23.3e-1142616292374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               +++++e+A a+s+g++e ++++L+rl + a+p+g++ qRl  +++ AL++r+++       a +p + +e  s+e++aa++ ++++sP++k+++l+aN aI
  OMO83973 261 KQTIMEAASAISEGKTEVVNEILTRLAQAANPKGNSEQRLMDCMLLALKSRVNS-------AENPPPVAELFSKEHAAATQSLYDLSPCFKLGFLAANLAI 354
               5789*************************************************9.......334444444569**************************** PP

      GRAS 103 leavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
               l+a+  +   +++H+iDfdi+qG+Q+++Ll+aL++R  g+p +++iT+v++  +g  ++l+++g++L+++A+++gv ++fnv+++ +l+dl+ e+L ++p+
  OMO83973 355 LDATLDQpnsNKLHVIDFDIGQGGQYMNLLHALSERGTGKPaMVKITAVSD--NGGDDRLKTVGDNLSQIADRFGVCLKFNVITSLKLNDLSRESLGCEPD 453
               ***98887889*************************955554*********..77***************************9999*************** PP

      GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
               E laVn++++l+r++desvs+e++rde+L+ vk+l P+vv++veqe+++n+++F++r+ ea+ yy alfds+e+++pr+s+er+kvE+  l r++ n vac
  OMO83973 454 EPLAVNFAFKLYRMPDESVSVENPRDELLRRVKGLAPRVVTLVEQEMNTNTAPFATRVGEACGYYGALFDSIESTVPRDSSERVKVEEG-LWRKVANSVAC 553
               *****************************************************************************************.9********** PP

      GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               eg++r+er+e ++kWr+r+++aGF+  pls+++a+++++ l+  +  + g++v+ee+g + +gW++r+L+++SaWr
  OMO83973 554 EGRDRVERCEVFGKWRARMSMAGFELKPLSQNVAESMRARLNSGNrvNPGFTVKEENGGVSFGWMGRTLTVASAWR 629
               ***************************************9998777789**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    
MASGFSGGGP DFYGGIAGRS MANTGAMSNN QPTAPYRTQI PGIFMDPTSQ IVNRAAPSLI  60
GKRTLADFQT QQHQNNHAAL SSLYLRSVKP RTYQHASPIS PLSPIDFASN LSPDVTSNFS  120
SASSCMSQRY GLPLLQHLRP QQFPLGTTSG TTIPPVNPGL PGVPYVNPVQ TRVVQQQQDP  180
EKKMLNQLQE LEKQLLDDDN DEEGDAVSVI TNTNSEWSET IQNLISSSSP TNPIAPSPTS  240
STTSSSSSTS SVASPASTCS KQTIMEAASA ISEGKTEVVN EILTRLAQAA NPKGNSEQRL  300
MDCMLLALKS RVNSAENPPP VAELFSKEHA AATQSLYDLS PCFKLGFLAA NLAILDATLD  360
QPNSNKLHVI DFDIGQGGQY MNLLHALSER GTGKPAMVKI TAVSDNGGDD RLKTVGDNLS  420
QIADRFGVCL KFNVITSLKL NDLSRESLGC EPDEPLAVNF AFKLYRMPDE SVSVENPRDE  480
LLRRVKGLAP RVVTLVEQEM NTNTAPFATR VGEACGYYGA LFDSIESTVP RDSSERVKVE  540
EGLWRKVANS VACEGRDRVE RCEVFGKWRA RMSMAGFELK PLSQNVAESM RARLNSGNRV  600
NPGFTVKEEN GGVSFGWMGR TLTVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0GRAS family protein