PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO83839

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 735aa MW: 79079.3 Da PI: 6.1407

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO83839	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.2	6.1e-32	317	374	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k OMO83839 317 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPSCQVKKKVERSH-EGHITEIIYKGAHNHPK 374 7**************************************.*************85 PP
2	WRKY	103.7	1e-32	529	587	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+ OMO83839 529 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 587 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence
MVGVDDNVAI IGDWIPPTPS PRTIFTAMLG DDDGSKSVSE TPGENKTEGL CLGSRGMMTA 60 ENGDKKVVHQ GCEQLNELGL ISEQKPSSRG GLVERMAARA GFNAPRLNTE SIRPSDLSVS 120 GNGSPYLTIP PGLSPTTLLE SPVFVSNSLA QPSPTTGKFP FIPNGGRSFT SESPDKSKDN 180 YFEDINPPSF AFKPVAEENS SFLLGAMNRI TPASLPQHSN LNIEVSVQSE NSLPSQNVDP 240 VKVHSKNSNM LGVHADFSRS STEKDSGSNN SADQRVFDPA GGSAEHPLPL DEPQDEEGDQ 300 RGSGDCMAGG VGGAPSEDGY NWRKYGQKQV KGSEYPRSYY KCTHPSCQVK KKVERSHEGH 360 ITEIIYKGAH NHPKPPPNRR SAIGSSNPVT DMKLEVPEQT GPQNGADGDP LWTSAQKGAI 420 ATTHDWRHDS IEVTSSTPLG QEYGSGQAPN STHFESGDAV DASSTFSNDE DEDDQGTHGS 480 VSLGYDGEGD ESESKRRKIE AYASEMSGTT RAIREPRVVV QTTSEVDILD DGYRWRKYGQ 540 KVVKGNPNPR SYYKCTSAGC TVRKHVERAS HDLKSVITTY EGKHNHDVPA ARSSSHANSA 600 TSSTVTAQVA SSVHTHVHRP DPSQLHNNMV GPASFGPFTL PGRHQLGPSP GFSFGMNQSG 660 LANLAMAGLC PGQVKLPVLP VHPFMPQQRQ TNEMGFILPK GEPKMEPMSE PGLNLSNNTS 720 VYQQIMSRLP LGPQM

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence

MVGVDDNVAI IGDWIPPTPS PRTIFTAMLG DDDGSKSVSE TPGENKTEGL CLGSRGMMTA  60
ENGDKKVVHQ GCEQLNELGL ISEQKPSSRG GLVERMAARA GFNAPRLNTE SIRPSDLSVS  120
GNGSPYLTIP PGLSPTTLLE SPVFVSNSLA QPSPTTGKFP FIPNGGRSFT SESPDKSKDN  180
YFEDINPPSF AFKPVAEENS SFLLGAMNRI TPASLPQHSN LNIEVSVQSE NSLPSQNVDP  240
VKVHSKNSNM LGVHADFSRS STEKDSGSNN SADQRVFDPA GGSAEHPLPL DEPQDEEGDQ  300
RGSGDCMAGG VGGAPSEDGY NWRKYGQKQV KGSEYPRSYY KCTHPSCQVK KKVERSHEGH  360
ITEIIYKGAH NHPKPPPNRR SAIGSSNPVT DMKLEVPEQT GPQNGADGDP LWTSAQKGAI  420
ATTHDWRHDS IEVTSSTPLG QEYGSGQAPN STHFESGDAV DASSTFSNDE DEDDQGTHGS  480
VSLGYDGEGD ESESKRRKIE AYASEMSGTT RAIREPRVVV QTTSEVDILD DGYRWRKYGQ  540
KVVKGNPNPR SYYKCTSAGC TVRKHVERAS HDLKSVITTY EGKHNHDVPA ARSSSHANSA  600
TSSTVTAQVA SSVHTHVHRP DPSQLHNNMV GPASFGPFTL PGRHQLGPSP GFSFGMNQSG  660
LANLAMAGLC PGQVKLPVLP VHPFMPQQRQ TNEMGFILPK GEPKMEPMSE PGLNLSNNTS  720
VYQQIMSRLP LGPQM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	0.0	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO83839