PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO83759

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NF-YB

Protein Properties

Length: 181aa MW: 19999.7 Da PI: 5.6632

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO83759	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	169.2	4.7e-53	7	103	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vreqd+++Pianv+rim+++lPa+akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dyvepl+v+l +yre e+ek OMO83759 7 VREQDQYMPIANVIRIMRRILPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMGKLGFDDYVEPLTVFLGRYRESESEK 103 69********************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence
MPPPCIVREQ DQYMPIANVI RIMRRILPAH AKISDDAKET IQECVSEYIS FITGEANERC 60 QREQRKTITA EDVLWAMGKL GFDDYVEPLT VFLGRYRESE SEKTSLRGDP ILKRGIDYGP 120 MVMAPYGPGF HMGLGHHQGI FDAAAMGMGG FYRDGSGAAA GAGSSSQPSL TNNFDPFGQF 180 K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	1e-65	NF-YB family protein

Link Out ? help Back to Top
Ensembl	OMO83759