PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO83572 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 25307.1 Da PI: 7.1654 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.2 | 1.5e-21 | 33 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrd ++ ++r++lg+f++aeeAa+a++aa+++l+g OMO83572 33 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEEAARAYDAAARSLRG 83 68********.**********883....5*************************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MRRGRGAAAA AAAAATAVAT KPAVEHNGSI KEPRYRGVRK RPWGRFAAEI RDPWKKTRVW 60 LGTFDSAEEA ARAYDAAARS LRGPKAKTNF PINSSNIPAF PFENHHHNNE GFIDHHRLYP 120 MGDFQDPEVN PQRPTRSSMS STVESFSGPR PAQPPQISSD FAVVSTRNYQ PRPSPVVMPD 180 EDCHSDCDSS SSVIDDGDIA SSSCRKTLPF DLNFPPLDEV DDLQCTALCL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 4e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO83572 |