PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO83267

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 499aa MW: 54564 Da PI: 6.0372

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO83267	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.4e-33	273	327	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl OMO83267 273 KPRMRWTPELHECFVEAVHKLDGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 327 79****************************************************8 PP
2	Myb_DNA-binding	56.4	6.6e-18	275	326	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e +v+av++l g+ t+k + + m+ +g+t +++ks++qky+ OMO83267 275 RMRWTPELHECFVEAVHKLDGPekaTPKGVLKLMNvEGLTIYHVKSHLQKYR 326 89*************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MKVGMSSKTM THPSLISVTQ SEPSKGFGES YHTAVSPVHN FLSIESEGQS SLAGECLSPH 60 QFPFIRTESF NSSHMQASTV QPNKNNLKYG PSSPISPSLH AKGAFSRSSV FCTSLYLSSS 120 STSETQRQLG NLPFLPHPPT CNQSASAVDS SKSPVVFSED LSNPYNEDHS EVLMKDFLNL 180 PEDACGGSFH GMHCESDDFA LTEQLELQFL SDQLDIAITD NGENPRLDEI YETPQQSSKL 240 TVGLACNQNS APVAPSMDSP ASLPQSGPVA VHKPRMRWTP ELHECFVEAV HKLDGPEKAT 300 PKGVLKLMNV EGLTIYHVKS HLQKYRLAKY MPEKKEEKKT SGSEEKKVAS SSSEGDGKKK 360 GAVHITEALR MQVEVQKQLH EQLELQRSLQ LRIEEHARYL QKILEEQQKA GSALIPSLSM 420 STLTDSSQTL ELQPSSPSAI ASLSQPSESK TKSSSSSLPP KSKAPEDSDC KTESSPKRLR 480 TEDKQESAAD EPVVENPVQ

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MKVGMSSKTM THPSLISVTQ SEPSKGFGES YHTAVSPVHN FLSIESEGQS SLAGECLSPH  60
QFPFIRTESF NSSHMQASTV QPNKNNLKYG PSSPISPSLH AKGAFSRSSV FCTSLYLSSS  120
STSETQRQLG NLPFLPHPPT CNQSASAVDS SKSPVVFSED LSNPYNEDHS EVLMKDFLNL  180
PEDACGGSFH GMHCESDDFA LTEQLELQFL SDQLDIAITD NGENPRLDEI YETPQQSSKL  240
TVGLACNQNS APVAPSMDSP ASLPQSGPVA VHKPRMRWTP ELHECFVEAV HKLDGPEKAT  300
PKGVLKLMNV EGLTIYHVKS HLQKYRLAKY MPEKKEEKKT SGSEEKKVAS SSSEGDGKKK  360
GAVHITEALR MQVEVQKQLH EQLELQRSLQ LRIEEHARYL QKILEEQQKA GSALIPSLSM  420
STLTDSSQTL ELQPSSPSAI ASLSQPSESK TKSSSSSLPP KSKAPEDSDC KTESSPKRLR  480
TEDKQESAAD EPVVENPVQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.1	1e-99	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMO83267