PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO83262
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HD-ZIP
Protein Properties Length: 851aa    MW: 93400.2 Da    PI: 6.123
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO83262genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.8e-182280357
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OMO83262 22 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 80
              5679*****************************************************97 PP
2START169.12.9e-531723792204
               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS
     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100
               +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++   +e+l+d++ W ++++  ++l vi +g  g+++l+++++ a
  OMO83262 172 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRCLDVLSVIPTGngGTIELIYMQTFA 271
               68999*****************************************************.7777777777******************************** PP

               XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS
     START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197
               +++l++ Rdf+++Ry+ +l++g++v++++S++s +  p+   +s+++Rae+lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l++s+ + ++k++ 
  OMO83262 272 PTTLAAaRDFWTLRYTTSLEDGSLVVCERSLTSSTGGPTgppTSNFIRAEMLPSGFLIRPCDGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKMTI 372
               **********************************99999999*********************************************************** PP

               HHTXXXX CS
     START 198 atlqrqc 204
               a+l++ +
  OMO83262 373 AALRHIR 379
               **99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    
MSLSMHRDLS NDNNKVQMDN GKYVRYTPEQ VEALERVYSE CPKPSSLRRQ QLIRECPILS  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQSV NRKLTAMNKL LMEENDRLQK QVSHLVYENG  120
YMKQQLHTGS ATTTDNNSCE SVVMSGQHQQ QQNPTPQHPQ RDANNPAGLL AIAEETLAEF  180
LSKATGTAVD WVQMIGMKPG PDSIGIVAVS RNCSGVAARA CGLVSLEPTK IAEILKDRPS  240
WFRDCRCLDV LSVIPTGNGG TIELIYMQTF APTTLAAARD FWTLRYTTSL EDGSLVVCER  300
SLTSSTGGPT GPPTSNFIRA EMLPSGFLIR PCDGGGSIIH IVDHVDLDVW SVPEVLRPLY  360
ESSKILAQKM TIAALRHIRQ IAQETSGEIQ YGGGRQPAVL RTFSQRLCRG FNDAVNGFAD  420
DGWSLLGSDG VEDVTIMINS SPGKFLGSQY NTSMFPSFGG GVLCAKASML LQNVPPALLV  480
RFLREHRSEW ADYGVDTYSA ACLKASPYAV PSARPGGFPS SQVILPLAHT VEHEEFLEVV  540
RLEGHAFTPE DVALTRDMYL LQLCSGIDEN AVGACAQLVF APIDESFADD APLLPSGFRV  600
IPLDPKTDGP GASRTLDLAS ALEVGPGSNR SAADGDANNY NLRSVLTIAF QFTFENHLRD  660
NVASMARHYV RSVVGSVQRV AMAIAPSRLN SNMGPNSLPG SPEALTLAHW ICRSYRIHTG  720
GELLRADSQA GESLLKQLWH HSDAILCCSL KTNASPVFTF ANQAGLDMLE TTLVALQDIM  780
LDKILDEAGR KILCSEFSKI MEQGFAYLPA GICVSSMGRP ASYEQAVAWK VLNDDEENHC  840
LAFVFTNWCF V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein