PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO82990
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 311aa    MW: 35048.5 Da    PI: 10.2811
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO82990genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567e-18137228199
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               f+k +++s+v +  +l lp kf+e+h ++k+++ +++lede+g ++   +     ++r+ l++GW+ F+ +++L++gD +vF+l++ ++f  ++ ++r+
  OMO82990 137 FVKSMVRSHVYSCFWLGLPSKFCEHH-LSKRGTEDMVLEDEDGAEYGAIY--I--GERVGLSGGWRAFALDHKLDDGDALVFELVQPTRF--KIYIIRA 228
               89*********************777.5667889****************..4..44577************************987777..8877775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MVENSYEEAR RKRIEENKKK IQELGISKFS DSLAQASNSR RNKSQSQQRL SKPKPKDSTF  60
EVRRSSRARN PVPSYRDDVE INLPTLRKRS RSKSSSWESY LARPLDEVKI ASYEERVKAH  120
NAAEDLRNSL PSGNPSFVKS MVRSHVYSCF WLGLPSKFCE HHLSKRGTED MVLEDEDGAE  180
YGAIYIGERV GLSGGWRAFA LDHKLDDGDA LVFELVQPTR FKIYIIRASS ISGHGCEDND  240
ANKGLTDCTK KKTRGSVKLD SGSKKKKATS SGKNKGLPSS QELQIKNASD DDKGKCINVS  300
QRPKRKCKTT R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250267KKKTRGSVKLDSGSKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.19e-59B3 family protein