PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO82944

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 597aa MW: 65216.1 Da PI: 6.9937

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO82944	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.6	1.3e-33	250	307	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k OMO82944 250 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 307 8**************************************.*************85 PP
2	WRKY	106.6	1.3e-33	422	480	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+ OMO82944 422 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 480 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MASSCSSLDT SANSHPQNAF SFSTHPFMTS SFSDLLASGT VDDDNPSSAV NGGFSSRRGG 60 GLSLSDRIAE RTGSGVPKFK SLPPPSLPLS PPPVSPSSYF AIPPGLSPAE LLDSPVLLNA 120 SNILPSPTTG TFPAQAFNWK PNSGNNQQNV KQEDKNYSDF SFQTQPRPDS SSSAMFQSST 180 NSIQTAQQQA WSFQESAAKQ DMVKPEYNQM QSFSPEIANI QSNSQNNSGF QSDYSTNYPS 240 QTIRESRRSD DGYNWRKYGQ KQVKGSENPR SYYKCTFPNC PTKKKVERSL DGQITEIVYK 300 GSHNHPKPQS TRRSSSNSSS ALAIQTSSAA STEIPDQSFA THGSGQMDSA ATPENSSVSV 360 GDDELEQGSQ RSRSGGDEFD EEEPEAKRWK SEGENEGISA AGSRTVREPR VVVQTTSDID 420 ILDDGYRWRK YGQKVVKGNP NPRSYYKCTH PGCPVRKHVE RASHDLRAVI TTYEGKHNHD 480 VPAARGSGSH SVNRPLPDQN NNINGNNNAA MAIRPSAINN HPNNSMTNPL RSLRQPTGEG 540 QTPFTLEMLQ GNGNFGFSGF GNSMGSFMNQ PQQHVNNMFS RTKEEPRDEV FIESLLC

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MASSCSSLDT SANSHPQNAF SFSTHPFMTS SFSDLLASGT VDDDNPSSAV NGGFSSRRGG  60
GLSLSDRIAE RTGSGVPKFK SLPPPSLPLS PPPVSPSSYF AIPPGLSPAE LLDSPVLLNA  120
SNILPSPTTG TFPAQAFNWK PNSGNNQQNV KQEDKNYSDF SFQTQPRPDS SSSAMFQSST  180
NSIQTAQQQA WSFQESAAKQ DMVKPEYNQM QSFSPEIANI QSNSQNNSGF QSDYSTNYPS  240
QTIRESRRSD DGYNWRKYGQ KQVKGSENPR SYYKCTFPNC PTKKKVERSL DGQITEIVYK  300
GSHNHPKPQS TRRSSSNSSS ALAIQTSSAA STEIPDQSFA THGSGQMDSA ATPENSSVSV  360
GDDELEQGSQ RSRSGGDEFD EEEPEAKRWK SEGENEGISA AGSRTVREPR VVVQTTSDID  420
ILDDGYRWRK YGQKVVKGNP NPRSYYKCTH PGCPVRKHVE RASHDLRAVI TTYEGKHNHD  480
VPAARGSGSH SVNRPLPDQN NNINGNNNAA MAIRPSAINN HPNNSMTNPL RSLRQPTGEG  540
QTPFTLEMLQ GNGNFGFSGF GNSMGSFMNQ PQQHVNNMFS RTKEEPRDEV FIESLLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-119	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO82944