PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO82846 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 726aa MW: 77327.8 Da PI: 7.2893 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.1 | 1.4e-38 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dC+++pyfp ++p++f vh+++Gasnv kll++lp++ r +a++sl++eA++r++dPvyG+vg i+ lqq++++++++l+++++e OMO82846 7 RCAACKYLRRRCAPDCIFSPYFPPTNPQRFVSVHRIYGASNVAKLLQQLPTHLRAEAADSLCFEAQCRVEDPVYGCVGRISLLQQEIHKAETQLVKTQAE 106 6**********************************************************************************************99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence |
MNNSSGRCAA CKYLRRRCAP DCIFSPYFPP TNPQRFVSVH RIYGASNVAK LLQQLPTHLR 60 AEAADSLCFE AQCRVEDPVY GCVGRISLLQ QEIHKAETQL VKTQAEIAVL KSQTQLGHVD 120 DLQALQFEPQ SDDIASLQSS SNPFGITTPT QSSSLFTTTP PPWSTPALVP FPSTGGSGCP 180 PAFLRDGAES NNAQLFGTGS AFGTSTIAST TPATATVVGN PSTVAFGTSP TPAFGSSAPP 240 AFASGQGPPS FGCKTPEYLR NRNAFGGWNN GGSILGTGSA TTTSTTPPSV VQPSPAFATM 300 ASSSTTSSSN PRILFDPKSG IWSLEIPPTL GSWKCSTSVN PAASFGASST PSFTFDCSPA 360 LAPAPAAAFG GQSTSKSNPS VCFDSKSNIW SLEIPPTIGS WKCSCSIIPA ASFGSFSTPS 420 FSFDSTAPGL ASFRQPSPPS QEATHHFFGC RCNACAAKTS PPSPPSQEAT HHFFGCRCNA 480 CAAKSSPPRP FATSFEREGS KAIAYEATSE EPYGSGQNMK VQSISAMCFY NSESHEVIRW 540 KDYQLGQKGT PTPNPFQLSP PKFTFPPQPQ PQSEEKDTPT TSPPPTNSSF FQANSDTPKE 600 PIFGKPQQPQ PERWFGQNVN VTRNPFQSTS PFQSTSLFQS ASTQTSIFSP TSFNTPSFSV 660 NEEQPRSLFS TARSSIVQTT LDDREEPVFG KGITSLFRDK DNEEKPRSLS FGFGTPIKAD 720 KLESVE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-50 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO82846 |