PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO82710

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB_related

Protein Properties

Length: 828aa MW: 91719.2 Da PI: 4.6839

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO82710	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.3	8.5e-09	524	567	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++ + el++ a++q+G++ +++I + ++ gR++ q+k+++ + OMO82710 524 RARWSKPDTELFYGAIRQFGPD-FSLIQQLFP-GRSRHQIKLKFKN 567 569***************88.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 828 aa Download sequence
MDDSDIFSDE PLVTQARAGA KFQPKTKRKE KDKNSGSIPS KAPDVGNEEA AKLLSSGLDA 60 AHVIDQCRSS GVTNPSQVAT ADSLLADDAV PNACDDLHSS FGRSVGESAD IFSDLECIDP 120 FLTQSSNNNA SIQIDDERMG TQEAGSFPDV DTDDILSDMT ILSGQRAGKF KPKPRLQTSV 180 VSSQPAVADS VTHPPNSQFV PSETMCGESS IPDFPPGEVP NCSPINLGAF IPPDPSTSEF 240 LANEELPNLA EASKTGVALP RDPSGVTEKV SSNITQRKAF PVSNPAQTSK QSSTGAEENE 300 NGKKRKQLRK EMTSPQVVHD PEEGTCNGDD PAVEFPSNSA RDEDKDDDDN GSDEYNVESA 360 SPKRRSSRRS KKPVAEKEKP PQKHKNANEK KAQKQKETKE ASDQPAKEQP KRFSHSTRRK 420 RKFVDETLLQ TPEDEIDFAK VALKDIILLA DYKERLAKKE AKELKSSSTN QSNNNTMQEE 480 YAHNEKSSHA SEHDQGYKDD QTSIRAQSSS FCLNYQSFMD KEPRARWSKP DTELFYGAIR 540 QFGPDFSLIQ QLFPGRSRHQ IKLKFKNEER RYPLRLSEAL ASRAKDHSYF EKVIEQLQQA 600 SEAEQQSNGD VSVDLTHEEE VTPETTGEVT KPDQDEDVAG RDQEADVTED HNGPVAKFVF 660 EAKWPALNDK WLEFPAEAID FWGKVLELRT EVNKVLEVAL TEKLIGSSLE AKVYLHTSDV 720 SLASRLLEMC PASNDADNLR RIFSTSQVEV VPSLGNELVE TIQHSGEYLV GEDRFWIGVS 780 RAEGSKCERC WNYSTQVGSF VEHPTLCSRC FNVVAETQLM PTMEAVTI

Sequence ? help Back to Top

Protein Sequence Length: 828 aa Download sequence

MDDSDIFSDE PLVTQARAGA KFQPKTKRKE KDKNSGSIPS KAPDVGNEEA AKLLSSGLDA  60
AHVIDQCRSS GVTNPSQVAT ADSLLADDAV PNACDDLHSS FGRSVGESAD IFSDLECIDP  120
FLTQSSNNNA SIQIDDERMG TQEAGSFPDV DTDDILSDMT ILSGQRAGKF KPKPRLQTSV  180
VSSQPAVADS VTHPPNSQFV PSETMCGESS IPDFPPGEVP NCSPINLGAF IPPDPSTSEF  240
LANEELPNLA EASKTGVALP RDPSGVTEKV SSNITQRKAF PVSNPAQTSK QSSTGAEENE  300
NGKKRKQLRK EMTSPQVVHD PEEGTCNGDD PAVEFPSNSA RDEDKDDDDN GSDEYNVESA  360
SPKRRSSRRS KKPVAEKEKP PQKHKNANEK KAQKQKETKE ASDQPAKEQP KRFSHSTRRK  420
RKFVDETLLQ TPEDEIDFAK VALKDIILLA DYKERLAKKE AKELKSSSTN QSNNNTMQEE  480
YAHNEKSSHA SEHDQGYKDD QTSIRAQSSS FCLNYQSFMD KEPRARWSKP DTELFYGAIR  540
QFGPDFSLIQ QLFPGRSRHQ IKLKFKNEER RYPLRLSEAL ASRAKDHSYF EKVIEQLQQA  600
SEAEQQSNGD VSVDLTHEEE VTPETTGEVT KPDQDEDVAG RDQEADVTED HNGPVAKFVF  660
EAKWPALNDK WLEFPAEAID FWGKVLELRT EVNKVLEVAL TEKLIGSSLE AKVYLHTSDV  720
SLASRLLEMC PASNDADNLR RIFSTSQVEV VPSLGNELVE TIQHSGEYLV GEDRFWIGVS  780
RAEGSKCERC WNYSTQVGSF VEHPTLCSRC FNVVAETQLM PTMEAVTI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	5e-34	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OMO82710