PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO82355
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 275aa    MW: 30983.6 Da    PI: 6.9485
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO82355genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1454e-4541381127
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
               +ppGfrF Pt+eelv++yL++k+eg++    + +++vi+ vdiy+++PwdLp+     ++++ ++w+fF++r++++a+g r++r t+sgyWkatg+   v+
  OMO82355   4 MPPGFRFYPTEEELVSFYLHNKLEGNRndlnHLMDRVIPVVDIYDFNPWDLPQfsvlLCHKDPEQWFFFIPRQESEARGGRPKRLTSSGYWKATGSPGYVY 104
               79*************************5554333448***************656764455677************************************* PP

       NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
               s++++ +g+k+t+vfy+grap+g+kt+W m+ey+
  OMO82355 105 SSNSRPIGVKRTMVFYNGRAPSGKKTEWKMNEYK 138
               *********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MEDMPPGFRF YPTEEELVSF YLHNKLEGNR NDLNHLMDRV IPVVDIYDFN PWDLPQFSVL  60
LCHKDPEQWF FFIPRQESEA RGGRPKRLTS SGYWKATGSP GYVYSSNSRP IGVKRTMVFY  120
NGRAPSGKKT EWKMNEYKAI EGEAPSSING APPSLRQEFS LCRVYKKSKC LRSFDRRPPP  180
GVVLMTGDVL VPHHDHGRRF GGEMSRQIGA GGAEGILATA TASSPESSSS GYHNNQHQPN  240
QPTAQTGAGE TSNTSRMVVD EECFWDVDGF WDPLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-73NAC family protein