PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO81674
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 352aa    MW: 40021.6 Da    PI: 6.7964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO81674genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH469.3e-1564117155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               r+ +hn+ Er RR+++N+ ++ Lr+llP a ++ +kKls  +++ +A +YI +Lq
  OMO81674  64 RKLNHNASERDRRKKVNNLYSSLRSLLPAA-AQMKKKLSFPATVSQALKYIPELQ 117
               6889*************************6.478888***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MCALAPFPTP SWPLVNPIGS YEREICSIES LFLQIPPPPS QEEIHQVDYQ YSPSFTSSDP  60
KMVRKLNHNA SERDRRKKVN NLYSSLRSLL PAAAQMKKKL SFPATVSQAL KYIPELQKEV  120
ERLIEKKEKV LERVSKQGAG LKLEEKQRKS RNNGRSLLGA AVSIKGLTES EVAIHITMAK  180
AHKKSDQLSE ILQYLEQDGM FLLLNATSFE SFGGMVFYNI HLQVERIENY KVESEVLSEK  240
LLSLNKEETV VESEVRNWLM QVEKTMDEES KRVEGFGDQT RKKCFQGLGL DFSSHYLDSK  300
TSEEDVQAVD VLLQQVQVKQ LPCLDKPQDT VAISTEGFGA YDGYGYGYGW RR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.18e-48bHLH family protein