PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO81384

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ERF

Protein Properties

Length: 449aa MW: 48423.8 Da PI: 6.6543

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO81384	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.6	2e-20	223	272	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g OMO81384 223 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 272 7******.******7.....337***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MCLLSKVAHQ RGSGHYIRFT PAGDGDEQHQ HQQEEQESYS QEIQSQSQIP MMQQQRRNNQ 60 SDMFFGQQSQ ATELSAMVSA LTNVVSSQRA VSATADWGGG YGGGAGLVTS SFGHSGSAAS 120 PSPSYNSSSA SPSGSGSGSG LWIGQKRGRE EEGSGSAQLI ESVTRVQRSF PDFIPSTLAD 180 SSSGATTTVT EETTNIVAPP STTTETSAAA AASYEETGER RRRYRGVRQR PWGKWAAEIR 240 DPHKAARVWL GTFDTAEAAA RAYDEAALRF RGNRAKLNFP ENVRLVPQPM QNFPATQTSV 300 SSSLTTHFPP SHSTPLPTYY QPQPVQSPTA DMLRDYWHYS QLLQSSTDFH APQATTTSLL 360 EQMIQSSQLA NIQQQPPLLS SSFSSLPSSF AASASSSSSA SASFPLLFGE QQQQQMGIFR 420 QPSNQNQASG PDFPAPPWSH PGHYPSSTG

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MCLLSKVAHQ RGSGHYIRFT PAGDGDEQHQ HQQEEQESYS QEIQSQSQIP MMQQQRRNNQ  60
SDMFFGQQSQ ATELSAMVSA LTNVVSSQRA VSATADWGGG YGGGAGLVTS SFGHSGSAAS  120
PSPSYNSSSA SPSGSGSGSG LWIGQKRGRE EEGSGSAQLI ESVTRVQRSF PDFIPSTLAD  180
SSSGATTTVT EETTNIVAPP STTTETSAAA AASYEETGER RRRYRGVRQR PWGKWAAEIR  240
DPHKAARVWL GTFDTAEAAA RAYDEAALRF RGNRAKLNFP ENVRLVPQPM QNFPATQTSV  300
SSSLTTHFPP SHSTPLPTYY QPQPVQSPTA DMLRDYWHYS QLLQSSTDFH APQATTTSLL  360
EQMIQSSQLA NIQQQPPLLS SSFSSLPSSF AASASSSSSA SASFPLLFGE QQQQQMGIFR  420
QPSNQNQASG PDFPAPPWSH PGHYPSSTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	224	ERRRRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64750.1	6e-17	ERF family protein

Link Out ? help Back to Top
Ensembl	OMO81384