PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO81055
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 301aa    MW: 33095.1 Da    PI: 8.1329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO81055genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-183484155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              +++ GVr+++ +g+WvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  OMO81055 34 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 84
              699*******.7*********32...35**********************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MEQQKGVSVS GSSNIKNGKF VKERSVAANN INKTKFVGVR QRPSGKWVAE IKDTTQKIRM  60
WLGTFETAEE AARAYDEAAC LLRGSNTRTN FSTQIPSNSH LSLKIRNLLN HKKSLKQGNS  120
AASTMNINSK KATIKASTII SSNNNNTNSS SFCNPIPSSS SNESFLSNSS HGSVVCDSIM  180
KQDIQVFDGA YRPDLSSCIG ELEPVSSQQF GQSWPISMGF DQIHLNHQGL HQLPQNPGPV  240
SAAIEPDLNQ MVEFERLKVE RQISASLYAM NGVNEYLENV FDPSDAALWD LPTLCQLFCQ  300
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-35ERF family protein