PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO80901

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 471aa MW: 51149.6 Da PI: 7.179

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO80901	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.3	6.2e-32	252	307	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ OMO80901 252 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVEGLTNDEVKSHLQKYRLH 307 68****************************************************97 PP
2	Myb_DNA-binding	41.1	4e-13	254	305	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W+++++ ++v+a ++lGg t+k I + m +g+t ++ks++qky+ OMO80901 254 RRCWSPDLHRRFVNALQMLGGSqvaTPKQIRELMKvEGLTNDEVKSHLQKYR 305 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MASPSELTLD CKPHSYSMLL KSFGENQQID QTQKLEEFLS RLEEERLKID AFKRELPLCM 60 QLLTNAVESS RQQLQAYRAN QGSIRPVLEE FIPLKNSSSD QNSDKGGGQN ISDKANWMTS 120 AQLWSQAGNE TKPQVPITSP KETHDIGFNV SPKLALDTKQ RNGGAFLPFS KDRSSSNSSC 180 PNSSSALQAL PDLALASANK DMDIHQDKKL CSETENGLSW KGNGNNNTSD AQTTNNSNTN 240 NNNTNTNQPH RKARRCWSPD LHRRFVNALQ MLGGSQVATP KQIRELMKVE GLTNDEVKSH 300 LQKYRLHTRR PSPSPQAAGA PTPQLVVLGG IWVPPEYATA AAAAHTGGPT LYGTHHPAAP 360 HAPPHFCASP VPQEFYTAAA ATPAPPPPQL HHHTLHHQLH MYKANSQAHS ASPESDVRGA 420 GDRSESIEDG KSESSSWKGE SGDNGGGGGK GLAALREEGE ESNGSEITLK F

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MASPSELTLD CKPHSYSMLL KSFGENQQID QTQKLEEFLS RLEEERLKID AFKRELPLCM  60
QLLTNAVESS RQQLQAYRAN QGSIRPVLEE FIPLKNSSSD QNSDKGGGQN ISDKANWMTS  120
AQLWSQAGNE TKPQVPITSP KETHDIGFNV SPKLALDTKQ RNGGAFLPFS KDRSSSNSSC  180
PNSSSALQAL PDLALASANK DMDIHQDKKL CSETENGLSW KGNGNNNTSD AQTTNNSNTN  240
NNNTNTNQPH RKARRCWSPD LHRRFVNALQ MLGGSQVATP KQIRELMKVE GLTNDEVKSH  300
LQKYRLHTRR PSPSPQAAGA PTPQLVVLGG IWVPPEYATA AAAAHTGGPT LYGTHHPAAP  360
HAPPHFCASP VPQEFYTAAA ATPAPPPPQL HHHTLHHQLH MYKANSQAHS ASPESDVRGA  420
GDRSESIEDG KSESSSWKGE SGDNGGGGGK GLAALREEGE ESNGSEITLK F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-111	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMO80901