PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO80022

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 373aa MW: 40431.1 Da PI: 7.9917

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO80022	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181	3.1e-56	17	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100 lppGfrFhPtdeel+++yL kkv +++++ ++i+evd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++s+ +++lv OMO80022 17 LPPGFRFHPTDEELITYYLLKKVLDSSFSG-RAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSkTSALV 116 79***********************999.89***********99999*************************************9856778 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfy+grapkgek++Wvmheyrle OMO80022 117 GMKKTLVFYRGRAPKGEKSNWVMHEYRLE 145 ***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MDSYAYHHFD NGGDTHLPPG FRFHPTDEEL ITYYLLKKVL DSSFSGRAIA EVDLNKCEPW 60 ELPEKAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA TGKDREIYSS KTSALVGMKK 120 TLVFYRGRAP KGEKSNWVMH EYRLEGKFAY HYLSRSSKDE WVISRVFQKS GSGNGGAASS 180 AGGGAKKSRM GTAAIALYQE PSSPSSVSLP PLLDPTSAAT ATTATSLTDR DSCSFDSHNQ 240 PEHVSCFSTI AAAAASAAAT GATTTTAPPP FHPGFDLALP PSPQMINNNN TLDSIARFSR 300 NPGATGFPSL RSLQENLNFP FFFSPPTFSV PPLQGGSSVN WGAVSEEGNG GSTGGGKMSM 360 GPTELDCMWT YAT

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MDSYAYHHFD NGGDTHLPPG FRFHPTDEEL ITYYLLKKVL DSSFSGRAIA EVDLNKCEPW  60
ELPEKAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA TGKDREIYSS KTSALVGMKK  120
TLVFYRGRAP KGEKSNWVMH EYRLEGKFAY HYLSRSSKDE WVISRVFQKS GSGNGGAASS  180
AGGGAKKSRM GTAAIALYQE PSSPSSVSLP PLLDPTSAAT ATTATSLTDR DSCSFDSHNQ  240
PEHVSCFSTI AAAAASAAAT GATTTTAPPP FHPGFDLALP PSPQMINNNN TLDSIARFSR  300
NPGATGFPSL RSLQENLNFP FFFSPPTFSV PPLQGGSSVN WGAVSEEGNG GSTGGGKMSM  360
GPTELDCMWT YAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53950.1	1e-105	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO80022