PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO79363
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 513aa    MW: 55866.2 Da    PI: 8.5291
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO79363genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.7e-32231288260
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
               +DgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkversa d++++ei+Y+g Hnhek
  OMO79363 231 EDGYNWRKYGQKPIKGCEYPRSYYKCTHLNCPVKKKVERSA-DGQITEIIYKGAHNHEK 288
               8****************************************.***************85 PP
2WRKY107.37.8e-34399457159
               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
               ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+
  OMO79363 399 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 457
               59********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    
MAEQGTRSKL SAPTRPTITL PPRPAMDGLF SGGSGLSPGP MTLVSAFFSD PDSTENRSFS  60
QLLAGAMASP GARTPYNPMD GFMEMGFKDG GEKSPPGFKQ TRPPLNMAAA RSPWFTVPPG  120
LSPSGLLNSP AFFPLSPQSP FGISHQQALA QVTAQAAFAQ SHVRAQAEYQ TLSAPAPSES  180
LNHRPSLNPE EASQQMPPPA SEPQSSGMEY SEASQSDRKN QPSVAVDKPA EDGYNWRKYG  240
QKPIKGCEYP RSYYKCTHLN CPVKKKVERS ADGQITEIIY KGAHNHEKPQ PNKQAKGGND  300
GNANSELGSQ GVAGNLNKLS ETVPAHTIPA KTYESTQVAA EMPSDSEEAC DGESREERDD  360
DEPNAKRRNT TGESAVVLSH KTVTEPKIIV QTRSEVDLLD DGYRWRKYGQ KVVKGNPHPR  420
SYYKCTSAGC NVRKHVERAS TDPKAVITTY EGKHNHDVPA ARNSSHNTVN NNLPQPKPQK  480
MAAEKHSLLQ EIDFRNTVQG PAVLRLKEEQ IRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-117WRKY family protein