PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO78884

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 413aa MW: 47386.9 Da PI: 7.6922

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO78884	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	159	182	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++++Lk+H + H OMO78884 159 YICGVCGRKCKTNMDLKKHFKQlH 182 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MNPLCSSFKS LHLNATPLLN KSDLHFSHSI SSTFPTHLKT NYIARKCHYL TVKSLASSGG 60 ANAVEIDMVR NKQGVYAPKQ KKVVILWDLD NKPPRGPPYE AALALKRVAE KFGEVVDMSA 120 YANRHAFIHL PEWVLQERRE RKHLDILERK GVVAPSEPYI CGVCGRKCKT NMDLKKHFKQ 180 LHERERQKKM NRMKSLKGKK RQRFKERFIS GNHKYNETAR SLVTPKVGYG LANELRRAGV 240 YVKTVQDKPQ AADWALKRQM QHSMSRGIDW LFLVSDDKDF VDMLRKAREA DLGTVVVGDW 300 DRGLGRHADL WVPWMGVENG EVTEKDLVPK RRRMEEDDGL FSVSEFDGGS VGELDGVVNE 360 LIVGRNEFGG VRISVFSEGE ELDEEEWETV EVDHKDYFDD SEDEIIFEDD GYY

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MNPLCSSFKS LHLNATPLLN KSDLHFSHSI SSTFPTHLKT NYIARKCHYL TVKSLASSGG  60
ANAVEIDMVR NKQGVYAPKQ KKVVILWDLD NKPPRGPPYE AALALKRVAE KFGEVVDMSA  120
YANRHAFIHL PEWVLQERRE RKHLDILERK GVVAPSEPYI CGVCGRKCKT NMDLKKHFKQ  180
LHERERQKKM NRMKSLKGKK RQRFKERFIS GNHKYNETAR SLVTPKVGYG LANELRRAGV  240
YVKTVQDKPQ AADWALKRQM QHSMSRGIDW LFLVSDDKDF VDMLRKAREA DLGTVVVGDW  300
DRGLGRHADL WVPWMGVENG EVTEKDLVPK RRRMEEDDGL FSVSEFDGGS VGELDGVVNE  360
LIVGRNEFGG VRISVFSEGE ELDEEEWETV EVDHKDYFDD SEDEIIFEDD GYY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	179	RRERKHLDILERKGVVAPSEPYICGVCGRKCKTNMDLKKHFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-176	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO78884