PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78874
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 267aa    MW: 29254.9 Da    PI: 8.2799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78874genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.3e-143986455
              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
              +h   Er RR+++++ f++L  llP++    s K +K++i+ +Av YIksLq
  OMO78874 39 MHIWTERERRKKMRNMFSNLHALLPQL----SAKADKSTIVDEAVTYIKSLQ 86
              67778*********************9....9*******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MEVDRAVGVA AASQKRSRNG GTSKNGKAAN GGDQSEHEMH IWTERERRKK MRNMFSNLHA  60
LLPQLSAKAD KSTIVDEAVT YIKSLQQTLQ TLQKQKLEKL RSATMADSSS IITPHQVQAN  120
SESNSRESFL ADHVQAGKPS NNNYPMSSNI IDVPQTLPAA PISPTSSGGF QTWFSPNVVI  180
NMCGDNAQIS VCTPRKPGIL STILYILEKH HLELVSAHIS SDQHRNMYMI HVHGTGGAST  240
DQFSEALSVE ETFKLAAGEM NLWLLSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.18e-44bHLH family protein