PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO78833

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 315aa MW: 34202.5 Da PI: 8.9109

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO78833	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.2	9e-19	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + OMO78833 12 KGPWSPEEDEALQRLVQTYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	56.3	7.2e-18	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ OMO78833 66 PFSPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MASTRKDVDR IKGPWSPEED EALQRLVQTY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 EVEHRPFSPE EDETIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMTDDL 120 NDDSPQPLKR SASLGAGNNV SGLYLNPSSP SGSDLSASSL PAASPVYRPL ARTGSLVPSS 180 QHVETASSST DPPTLLSLSL PGSDSSETSD RPPVSNPIPS PTTQVAIPPP APVLAPTPAP 240 APVPAARLQQ VGAQNMEYGT ENQQFFSAEF LAVMQEMIRK EVRSYMAGIE RNGLCLQTEA 300 IRNAVVKRIG ISKIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	8e-76	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO78833