PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO78488 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 528aa MW: 59344 Da PI: 4.863 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 364.4 | 1.6e-111 | 151 | 521 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkfshlt 97 lv+lLl+cAeav +d++la+++L+++ a+p gd++qR+ +f+ +L++rl+ +++ + s+ + + +e++ a++l+++++P++ f++++ OMO78488 151 LVHLLLACAEAVGCRDTQLANSMLTQIWASATPWGDSLQRVSYCFATGLKSRLSL-LQNVNGNGTISHCAMDVplmtRQEKMEAFHLLYQTTPYIAFGFMA 250 68**************************************************987.33443333333333222334499999******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvk 197 aN+aI +a++g++ +HiiD+++ + lQWp+L+++LasRpeg+p+lRiTg+ s++ s ele+ + L+ A++lg+ +efn++ + + + l+ e+L+++ OMO78488 251 ANEAIRQAAQGKDSLHIIDLGMDHTLQWPSLIRTLASRPEGAPTLRITGLTSHQ--SLLELEASMKSLTMDASSLGIALEFNMISEPvTPSLLTRENLNLR 349 ****************************************************55..9**************************7443588999******** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +gEal +n++ +lh+ ++es + + ++L+++k+lsP +++vveq+a+hn++ Fl rfle+l+yysa+fdslea+lpr+s +r+k+Er +++ei+n+v OMO78488 350 EGEALFINSITHLHKYVKESRGSLK---AILQAIKKLSPALITVVEQDANHNGPFFLGRFLESLHYYSAVFDSLEASLPRHSPQRMKIERLHFAEEIRNIV 447 *****************88776666...9************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 a eg++r+erhe++ +Wr++l++aGF+ + l+ +qa+++l+ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+ OMO78488 448 AYEGSDRIERHERADQWRRQLGRAGFQVMGLK--CLSQARMMLSVYGCDGYTLGSEKGCLLLGWKGRPIMLASAWQ 521 ****************************9985..89***************************************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence |
MEGINGWLSF PLYESFNHDF AIRRFCPARV ELEQGEWEEA MNYEIDSFSP DDHDTGSTPH 60 LAASEVDDLV DSFINMDDHV DDNDKDDQNS KKEQDFHDFQ DGIDFVEFPM MMMEGDDHEL 120 ERSGSCEDFG AHEMVPSVEE VSHGVDQGLH LVHLLLACAE AVGCRDTQLA NSMLTQIWAS 180 ATPWGDSLQR VSYCFATGLK SRLSLLQNVN GNGTISHCAM DVPLMTRQEK MEAFHLLYQT 240 TPYIAFGFMA ANEAIRQAAQ GKDSLHIIDL GMDHTLQWPS LIRTLASRPE GAPTLRITGL 300 TSHQSLLELE ASMKSLTMDA SSLGIALEFN MISEPVTPSL LTRENLNLRE GEALFINSIT 360 HLHKYVKESR GSLKAILQAI KKLSPALITV VEQDANHNGP FFLGRFLESL HYYSAVFDSL 420 EASLPRHSPQ RMKIERLHFA EEIRNIVAYE GSDRIERHER ADQWRRQLGR AGFQVMGLKC 480 LSQARMMLSV YGCDGYTLGS EKGCLLLGWK GRPIMLASAW QLHNVSSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 1e-81 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO78488 |