PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78478
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YC
Protein Properties Length: 268aa    MW: 30030.9 Da    PI: 5.8696
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78478genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.37.4e-56811851102
     NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
               ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+pr
  OMO78478  81 QLQMFWANQmqeIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPR 181
               89******988889*************************************************************************************** PP

     NF-YC  99 delk 102
               delk
  OMO78478 182 DELK 185
               *975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MDQLEQTQQQ QHQQQPVMGV VSGAGQMSYS TGPYQTAAMV ASGTPAVAAP SPTQPPATFS  60
SSPHQLAYQQ AQHFHQQQQQ QLQMFWANQM QEIEQTSDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAISRTD VFDFLVDIIP  180
RDELKEEGLG VTKATIPLVG SPADMPYYYV PQHSVGPTGM IMGKPVDQAA LYQGQQPRPP  240
MAFMPWPQGQ PQQQQQQPQQ SQQQQSDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.11e-75NF-YC family protein