PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78406
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 301aa    MW: 31820 Da    PI: 6.4072
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78406genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.8e-10150194554
               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
       HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
               h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  OMO78406 150 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 194
               99***********************55......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MANNPNEAPT DDFLEQILGL PNFAPTETGL PGHDGGLAGT AAAAPMMLQL SSGDGAGHLG  60
AIGGGGGAAF HGQVFPLGLS LEQGKGGFLK PEEASGSGKR FRDEVVDGRA SSVKNVFHGQ  120
PMPATVAAAP HPPAMRPRVR ARRGQATDPH SIAERLRRER IAERIRALQE LVPSVNKTDR  180
AAMLDEIVDY VKFLRLQVKV LSMSRLGGAG AVAPLVTDIP LSSVEDESGE GGRNQPAWEK  240
WSNDGTERQV AKLMEENVGS AMQFLQSKAL CIMPISLATA IYHTQPPDTS SIIKPETNPP  300
S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-118bHLH family protein