PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78385
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family WRKY
Protein Properties Length: 373aa    MW: 41605.1 Da    PI: 10.194
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78385genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.87.9e-27291343354
               -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES CS
      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYeg 54 
               D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYe 
  OMO78385 291 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEA 343
               99***********************9988**********************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MEEVEEANKA AVESCHRVLS ILSKPQDQVH YRNLMAETGE AVFRFKRVVS ILNAGLGHAR  60
VRKLRKLQTP FPQSILLDNP HHKATDYPSK SLQLGYHEKS AQELSSHAKN SLYLANTSLE  120
LSSNGKNPLQ LAQQAPSSHY HFLQQQQHLQ QRLQLQQQQQ QQQQQQQQQQ QQLKHQAEMM  180
FRKSNSGINL NFDSSSCTPT MSSTRSFISS LSIDGSVANM DGGSAFHLIG APRSSDQGSQ  240
QKKKCSGRGE DGSVKCASSG RCHCSKKRKH RVKRSIKVPA ISNKLADIPP DDYSWRKYGQ  300
KPIKGSPHPR GYYKCSSMRG CPARKHVERC LEEPSMLIVT YEAGIEPSAG PKEIVTIGVS  360
IVRTLSSFMA TNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-109WRKY family protein