PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO77863

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CO-like

Protein Properties

Length: 374aa MW: 42062.9 Da PI: 5.6193

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO77863	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.4	1.2e-07	10	53	2	39
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + r C+ +++ ++ l+C+ ++ lC +C e H+ H++ OMO77863 10 QGRLCDYCNQSKALLYCRADSAKLCFSCDREVHSAnqlfnrHSR 53 6789****99*******************65677777776 PP
2	zf-B_box	28.9	2.4e-09	53	98	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42 + + C+ +++ ++++fCe+ q+ +C +C e Hk H+++p+ OMO77863 53 RSQLCDACDRSPASIFCETEQSVFCSNCDWENHKLslsssHNRRPI 98 5689*****************************5477788888775 PP
3	CCT	65.1	2e-22	330	372	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ a++RYkeKrktR+F+K+irYesRK +Ae+R R+KGrF+k OMO77863 330 RDSAISRYKEKRKTRRFDKHIRYESRKLRAETRTRIKGRFAKV 372 899**************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MTDLENTQKQ GRLCDYCNQS KALLYCRADS AKLCFSCDRE VHSANQLFNR HSRSQLCDAC 60 DRSPASIFCE TEQSVFCSNC DWENHKLSLS SSHNRRPIEG FTGCPSVSEL VSFVGIEDLG 120 NKVPFLGEEK VGCGDGCEED GYLDLLSWET PVISGFDDLI VSSDFNHGFK PTDVPSLPKN 180 RNASCGQHKE EIFRQLREMA KSEPNLSFEK TDLEAIVGFQ SLIPDAGNLQ PGSVNTTSKN 240 DADPVPFPLY ESSALECFSD NAEMGNQVFV PFSQLRSYTE ENAVVPDKHI DTSKTIHVTS 300 QEDQLEHQVA AGTIAAVPKI AFHELNSQER DSAISRYKEK RKTRRFDKHI RYESRKLRAE 360 TRTRIKGRFA KVEH

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MTDLENTQKQ GRLCDYCNQS KALLYCRADS AKLCFSCDRE VHSANQLFNR HSRSQLCDAC  60
DRSPASIFCE TEQSVFCSNC DWENHKLSLS SSHNRRPIEG FTGCPSVSEL VSFVGIEDLG  120
NKVPFLGEEK VGCGDGCEED GYLDLLSWET PVISGFDDLI VSSDFNHGFK PTDVPSLPKN  180
RNASCGQHKE EIFRQLREMA KSEPNLSFEK TDLEAIVGFQ SLIPDAGNLQ PGSVNTTSKN  240
DADPVPFPLY ESSALECFSD NAEMGNQVFV PFSQLRSYTE ENAVVPDKHI DTSKTIHVTS  300
QEDQLEHQVA AGTIAAVPKI AFHELNSQER DSAISRYKEK RKTRRFDKHI RYESRKLRAE  360
TRTRIKGRFA KVEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	1e-102	CO-like family protein

Link Out ? help Back to Top
Ensembl	OMO77863