PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OMO77367

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 395aa MW: 43877.6 Da PI: 8.8207

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO77367	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4e-32	215	268	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ OMO77367 215 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 268 9****************************************************7 PP
2	Myb_DNA-binding	48.5	2.1e-15	216	267	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWTt ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ OMO77367 216 RMRWTTTLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 267 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MELFPAQPDL SLQISPPNSK SSSTWRRTTT EEDMDLGFWK RALDSRNSSM AKPDNNCAFD 60 LSLSNPTRVS VSVSDSNSNN THHLHGLLQN GAAAAANCNG NLFHAAYHQN QFPHHHHHHH 120 SQLQHQHPVL YQQQQQQQGL GLGQELGFLR PIRGIPVYQN PPTPTPFPFA QQPLVDSSSP 180 SSLGSNNSSS PFQSQGLMRS RFMSRFPAKR SMRAPRMRWT TTLHARFVHA VELLGGHERA 240 TPKSVLELMD VKDLTLAHVK SHLQMYRTVK TTDRAAATSG QSDAFDNGSS GDTSEDLMFD 300 IQNPRRSEVS VQQGRSSSNA LQDKDYHGLW SNSSREAWLH GKPKDSHSAG NLPSLEKDMD 360 PKCLSYERIS EVSSSSHSGT SPKKPNLEFT LGVPH

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MELFPAQPDL SLQISPPNSK SSSTWRRTTT EEDMDLGFWK RALDSRNSSM AKPDNNCAFD  60
LSLSNPTRVS VSVSDSNSNN THHLHGLLQN GAAAAANCNG NLFHAAYHQN QFPHHHHHHH  120
SQLQHQHPVL YQQQQQQQGL GLGQELGFLR PIRGIPVYQN PPTPTPFPFA QQPLVDSSSP  180
SSLGSNNSSS PFQSQGLMRS RFMSRFPAKR SMRAPRMRWT TTLHARFVHA VELLGGHERA  240
TPKSVLELMD VKDLTLAHVK SHLQMYRTVK TTDRAAATSG QSDAFDNGSS GDTSEDLMFD  300
IQNPRRSEVS VQQGRSSSNA LQDKDYHGLW SNSSREAWLH GKPKDSHSAG NLPSLEKDMD  360
PKCLSYERIS EVSSSSHSGT SPKKPNLEFT LGVPH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-72	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMO77367