PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76179

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

BES1

Protein Properties

Length: 350aa MW: 37742.8 Da PI: 6.7093

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76179	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	216.6	5.8e-67	2	146	1	150
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslkss 101 ++++r+ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp ++++++g sasasp+ss++ OMO76179 2 TSGTRMPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVDRMDIIGGSASASPCSSYH------ 96 5899*****************************************************************************************...... PP DUF822 102 alaspvesysaspksssfpspssldsislasa...asllpvlsvlslvsssl 150 +sp++sy++sp sssfpsp++ +++++ + +sl+p+l++ls+ sss+ OMO76179 97 --PSPCASYNPSPGSSSFPSPAHHTTANANANsdaNSLIPWLKNLSSGSSSA 146 ..***************998877766556779*******9977664 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MTSGTRMPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCNEAG 60 WTVEEDGTTY RKGCKPVDRM DIIGGSASAS PCSSYHPSPC ASYNPSPGSS SFPSPAHHTT 120 ANANANSDAN SLIPWLKNLS SGSSSASSKL AHHLYNIAGG SISAPVTPPL SSPTSRTPRT 180 QNDWDERAAG SAWGAQRYPY LPSSTPPSPT RGQGFPDSGW LSRLEIPQSG PTSPTFSLVS 240 RSPFGFKDDS FSAGGSRMWT PGQSGTCSPA LPAGLDQTSD VPMSDVIAAE FAFGSNVTGL 300 VKPWEGEKIH EECVADDDLE LTLGKNFVEE IMRNQAAIAE EADDIWLHAY

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MTSGTRMPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCNEAG  60
WTVEEDGTTY RKGCKPVDRM DIIGGSASAS PCSSYHPSPC ASYNPSPGSS SFPSPAHHTT  120
ANANANSDAN SLIPWLKNLS SGSSSASSKL AHHLYNIAGG SISAPVTPPL SSPTSRTPRT  180
QNDWDERAAG SAWGAQRYPY LPSSTPPSPT RGQGFPDSGW LSRLEIPQSG PTSPTFSLVS  240
RSPFGFKDDS FSAGGSRMWT PGQSGTCSPA LPAGLDQTSD VPMSDVIAAE FAFGSNVTGL  300
VKPWEGEKIH EECVADDDLE LTLGKNFVEE IMRNQAAIAE EADDIWLHAY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	8e-94	BES1 family protein

Link Out ? help Back to Top
Ensembl	OMO76179