PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO75327
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 350aa    MW: 39527.5 Da    PI: 8.3146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO75327genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12176222455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  OMO75327 176 DHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 222
               699************************.....9******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MVGEDDKKSA KQQKKEGFGS TPGKFLSESG SSMEISSICR ELPELGLMEE YPNLLNQYWN  60
MNSFDELSNI VPLAAAAFGE NLHNSFPNTA IDRPFKHLKT DISDISNLHQ LQPVACSPNN  120
FCFPMDNPIG IVKPKEEEAA AACSKSQHYN YMRKASCHET KRVVGTCNNN SQTTQDHIMA  180
ERKRREKLSQ RFIALSAIVP GLKKMDKASV LGDAIKYLKQ LQEKVKTLEE KTRKRTMESA  240
VVFVKKSRLI AEGDDFSSDG NYFNEPLPEI EARFCDKSVL IRIHCEKRKG LAEKIVSEIE  300
KTHLTVLNSN VITFGNYALD ITIVAQMEME FCMTVKDLVK KLRLAFKSLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERKRRE
2182187RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-61bHLH family protein